How can I get rid of gnome-system-log in gconf? Uninstalling (and
purging) gnome-utils didn't fix it.

I think you just need to check the existence of default_logfiles[i] in
logview_prefs_fill_defaults (I did it with fopen - maybe overkill?) but
as long as I have the gconf entry present it's not creating the initial
logfile list and I cannot test if it works.

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gnome-system-log attempts to open bogus/inexistent logfiles
https://bugs.launchpad.net/bugs/318689
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