Mmm... after some investigation it seems that the problem is in the
notification-daemon package. If you see the changelog:
notification-daemon (0.3.4-0ubuntu6) dapper; urgency=low
* debian/patches/01_ubuntu_theme.diff:
- fix the in height caclulation for the body (ubuntu: #40379)
Maybe the problem is in the above patch (maybe).
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Notification bubble shows sometimes wide, sometimes narrow
https://launchpad.net/bugs/45656
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