I just got this but again. BUT this time on my ext3-partition! (i was moving 
some files on the same ext3 partition)
So now, I really believe it's a nautilus bug.
2 facts:
- happens on different file systems
- happens on different physical harddiscs (I got 2x SATA (500GB+250GB) and 1x 
IDE (250GB))

Perhaps, the bug happens when creating the thumbnail-previews in
nautilus?

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endless loading in nautilus / some files missing
https://bugs.launchpad.net/bugs/383927
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