I can confirm this bug. I've got several external USB drives formatted
as NTFS. These drives were filled with media files over many older
versions of Ubuntu, though now I'm running Jaunty. When Baobab scans
these drives, it reports a wrong size for almost every folder containing
files with long names. It reports all these folders as "contains
hardlinks for: XX GB". However, I have discovered a (tedious)
workaround: if I simply move all the files in that folder to a temp
folder, then move them back, Baobab reports the folder size correctly
(to the first level). However, this does not work recursively down the
tree, so as you can imagine, this can be quite cumbersome if the tree
structure is complicated. The workaround works whether I move the files
using nautilus or with a terminal. Since I have a large media collection
and a complex tree structure, I would like to automate the workaround so
I don't have to touch every file by hand. I have been able to
incorporate the workaround into a script, but it doesn't work
recursively yet. Oh, and speaking of touching the files, "touch *" is
not enough, nor is it enough to simply rename the folder. I don't know
why, but I have found that the files have to be moved to a new folder,
then back.

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Baobab reports incorrect sizes
https://bugs.launchpad.net/bugs/341141
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Desktop Bugs, which is a bug assignee.

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