I think the "does get" was a typo here:
   
  "Another observation is if I use the "eject" command on the comand line the 
Realtek device does get ejected from the USB bus. Only when you eject from 
nautilus does it do it."

and should mean "with using /usr/bin/eject the underlying reader does
_not_ get ejected.

It seems that dk-disks somehow ejects the devices "too deeply".

** Package changed: gvfs (Ubuntu) => devicekit-disks (Ubuntu)

** Changed in: devicekit-disks (Ubuntu)
     Assignee: (unassigned) => Martin Pitt (pitti)

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dell mini 10v SD/SDHC slot gets ejected from the USB bus on nautilus 'eject' 
https://bugs.launchpad.net/bugs/404185
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