I've resolved the problem, at least for my personal use.
If I turn the 2nd monitor on first, and turn the 1st monitor off after,
I have no problem:
xrandr --output LVDS1 --preferred ; xrandr --output VGA1 --off
There is still a problem when I turn the 1st monitor off first before
turning the 2nd monitor on (meaning both monitors are off for a fraction
of a second).
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xrandr causes gnome bottom panel to go to top
https://bugs.launchpad.net/bugs/427382
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