This has been closed as NOTABUG upstream:
"The file browser plugin is simply following the nautilus settings to be
consistent with the desktop. So, if you want it to ask for confirmation, simply
enable that option in nautilus and the plugin will do so."
** Changed in: gedit (Ubuntu)
Status: Triaged => Invalid
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gedit moves files to trash without confirmation
https://bugs.launchpad.net/bugs/385124
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