You can edit your menu by:
right-click on "applications" then edit menu
or
System -> preferences -> main menu
Did closing & reopening your gnome session made the appz to finally disappears ?
Which were this appz ? (Did they come from ubuntu)
** Package changed: ubuntu => gnome-panel (Ubuntu)
** Changed in: gnome-panel (Ubuntu)
Status: New => Incomplete
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Missing Icons with deleted Applications
https://bugs.launchpad.net/bugs/511096
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