same here on 12.04 64bit. No auto-login.

Trying to shutdown from a (one and only) Desktop session just logs out
to lightdm. There "shutdown" leads to nothing. No reaction. There is no
other "real" session running. The output of ck-list-sessions:

Session4:
        unix-user = '123'
        realname = 'Cloudera Manager'
        seat = 'Seat1'
        session-type = ''
        active = FALSE
        x11-display = ''
        x11-display-device = ''
        display-device = '/dev/???'
        remote-host-name = ''
        is-local = TRUE
        on-since = '2012-07-07T16:21:25.747608Z'
        login-session-id = '4294967295'
Session5:
        unix-user = '1000'
        realname = 'foobar'
        seat = 'Seat1'
        session-type = ''
        active = FALSE
        x11-display = ''
        x11-display-device = ''
        display-device = '/dev/tty1'
        remote-host-name = ''
        is-local = TRUE
        on-since = '2012-07-07T16:21:51.036134Z'
        login-session-id = '4294967295'
        idle-since-hint = '2012-07-07T16:25:22.841253Z'

The latter sessions of course exists only because i need to start a tty
login to run the command. So normaly there is only this user "123". The
processes of that user are just some server processes.

After shutting them down (and closing my tty session) i am able to
shutdown the system.

In my case (and for those reporting other server processes) the problem
seems to be, that ConsoleKit (ck-list-session) threats some user
processes as active user. How to fix this?

-- 
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https://bugs.launchpad.net/bugs/838792

Title:
  "Restart" logs out, even when there are no other people logged in

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