Thank you for reply, David!

>I have an idea of what's wrong here but before I speculate on that,
what exactly does "enable automount" mean? Are you referring to having
the 'auto' option in the /etc/fstab file?

By "enable automount" I mean these dconf-editor parameters:
org.gnome.desktop.media-handling.automount and org.gnome.desktop.media-
handling.automount-open (see comment #5). So if I set both parameters to
true (in dconf-editor) I get all two partitions of my drive mounted in
Nautilus on device connection.

>When the system is running with the WD USB-HDD, please include the
output of 'gvfs-mount -li' from a non-root shell in a terminal in the
desktop session.

The output of 'gvfs-mount -li' for my WD USB-HDD is as follows:
        Drive(3): WD My Passport 0743
          Type: GProxyDrive (GProxyVolumeMonitorUDisks2)
          ids:
           unix-device: '/dev/sdc'
          themed icons:  [drive-harddisk-usb]  [drive-harddisk]  [drive]
          symbolic themed icons:  [drive-harddisk-usb-symbolic]  
[drive-harddisk-symbolic]  [drive-symbolic]  [drive-harddisk-usb]  
[drive-harddisk]  [drive]
          is_media_removable=0
          has_media=1
          is_media_check_automatic=1
          can_poll_for_media=0
          can_eject=0
          can_start=0
          can_stop=1
          start_stop_type=shutdown
          sort_key=01hotplug/1391451089446989
          Volume(0): WD_2TB_NTFS
            Type: GProxyVolume (GProxyVolumeMonitorUDisks2)
            ids:
             class: 'device'
             unix-device: '/dev/sdc2'
             uuid: '32BA1ADB5E526052'
             label: 'WD_2TB_NTFS'
            themed icons:  [drive-harddisk-usb]  [drive-harddisk]  [drive]
            symbolic themed icons:  [drive-harddisk-usb-symbolic]  
[drive-harddisk-symbolic]  [drive-symbolic]  [drive-harddisk-usb]  
[drive-harddisk]  [drive]
            can_mount=1
            can_eject=0
            should_automount=1
            sort_key=gvfs.time_detected_usec.1391451089661368
          Volume(1): WD_2TB_EXT4
            Type: GProxyVolume (GProxyVolumeMonitorUDisks2)
            ids:
             class: 'device'
             unix-device: '/dev/sdc1'
             uuid: '6d296a81-e054-4e09-a092-cee6a0041e0c'
             label: 'WD_2TB_EXT4'
            themed icons:  [drive-harddisk-usb]  [drive-harddisk]  [drive]
            symbolic themed icons:  [drive-harddisk-usb-symbolic]  
[drive-harddisk-symbolic]  [drive-symbolic]  [drive-harddisk-usb]  
[drive-harddisk]  [drive]
            can_mount=1
            can_eject=0
            should_automount=1
            sort_key=gvfs.time_detected_usec.1391451089662205
            Mount(0): WD_2TB_EXT4 -> file:///run/media/flash/WD_2TB_EXT4
              Type: GProxyMount (GProxyVolumeMonitorUDisks2)
              default_location=file:///run/media/flash/WD_2TB_EXT4
              themed icons:  [drive-harddisk-usb]  [drive-harddisk]  [drive]
              symbolic themed icons:  [drive-harddisk-usb-symbolic]  
[drive-harddisk-symbolic]  [drive-symbolic]  [drive-harddisk-usb]  
[drive-harddisk]  [drive]
              can_unmount=1
              can_eject=0
              is_shadowed=0
              sort_key=gvfs.time_detected_usec.1391451089941622


For my Seagate HDD I have:


        Drive(3): ST950042 0AS
          Type: GProxyDrive (GProxyVolumeMonitorUDisks2)
          ids:
           unix-device: '/dev/sdc'
          themed icons:  [drive-harddisk-usb]  [drive-harddisk]  [drive]
          symbolic themed icons:  [drive-harddisk-usb-symbolic]  
[drive-harddisk-symbolic]  [drive-symbolic]  [drive-harddisk-usb]  
[drive-harddisk]  [drive]
          is_media_removable=0
          has_media=1
          is_media_check_automatic=1
          can_poll_for_media=0
          can_eject=0
          can_start=0
          can_stop=1
          start_stop_type=shutdown
          sort_key=01hotplug/1391451261668976
          Volume(0): NTFS
            Type: GProxyVolume (GProxyVolumeMonitorUDisks2)
            ids:
             class: 'device'
             unix-device: '/dev/sdc2'
             uuid: '5F6174ED0C58C4B3'
             label: 'NTFS'
            themed icons:  [drive-harddisk-usb]  [drive-harddisk]  [drive]
            symbolic themed icons:  [drive-harddisk-usb-symbolic]  
[drive-harddisk-symbolic]  [drive-symbolic]  [drive-harddisk-usb]  
[drive-harddisk]  [drive]
            can_mount=1
            can_eject=0
            should_automount=1
            sort_key=gvfs.time_detected_usec.1391451261990760
            Mount(0): NTFS -> file:///run/media/flash/NTFS
              Type: GProxyMount (GProxyVolumeMonitorUDisks2)
              default_location=file:///run/media/flash/NTFS
              themed icons:  [drive-harddisk-usb]  [drive-harddisk]  [drive]
              symbolic themed icons:  [drive-harddisk-usb-symbolic]  
[drive-harddisk-symbolic]  [drive-symbolic]  [drive-harddisk-usb]  
[drive-harddisk]  [drive]
              can_unmount=1
              can_eject=0
              is_shadowed=0
              sort_key=gvfs.time_detected_usec.1391451263178059
          Volume(1): GENTOO
            Type: GProxyVolume (GProxyVolumeMonitorUDisks2)
            ids:
             class: 'device'
             unix-device: '/dev/sdc1'
             uuid: '52e2b7ea-21e0-4973-aeae-f5b7edfadf40'
             label: 'GENTOO'
            themed icons:  [drive-harddisk-usb]  [drive-harddisk]  [drive]
            symbolic themed icons:  [drive-harddisk-usb-symbolic]  
[drive-harddisk-symbolic]  [drive-symbolic]  [drive-harddisk-usb]  
[drive-harddisk]  [drive]
            can_mount=1
            can_eject=0
            should_automount=1
            sort_key=gvfs.time_detected_usec.1391451261992313
            Mount(0): GENTOO -> file:///run/media/flash/GENTOO
              Type: GProxyMount (GProxyVolumeMonitorUDisks2)
              default_location=file:///run/media/flash/GENTOO
              themed icons:  [drive-harddisk-usb]  [drive-harddisk]  [drive]
              symbolic themed icons:  [drive-harddisk-usb-symbolic]  
[drive-harddisk-symbolic]  [drive-symbolic]  [drive-harddisk-usb]  
[drive-harddisk]  [drive]
              can_unmount=1
              can_eject=0
              is_shadowed=0
              sort_key=gvfs.time_detected_usec.1391451262121538
        

I hope this help you to understand the problem.

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https://bugs.launchpad.net/bugs/1239087

Title:
  Safely remove is not working (or broken) in Gnome Disks

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