This bug was fixed in the package metacity - 1:3.20.3-1ubuntu2
---------------
metacity (1:3.20.3-1ubuntu2) yakkety; urgency=medium
* Backport upstream patch to fix stack order handling when windows
are unmapped (no_remove_on_unmap.diff, LP: #1614050).
-- Dmitry Shachnev <mity...@ubuntu.com> Tue, 04 Oct 2016 15:57:03
+0300
** Changed in: metacity (Ubuntu)
Status: Confirmed => Fix Released
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https://bugs.launchpad.net/bugs/1614050
Title:
Window depth order messed up
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