I'm having this issue right now on 16.04.  What's strange, is that if I
copy say 600GB worth of thousands of files, about half way through, Xorg
will start chewing up resources, and everything slows down to a hault,
even though literally the only thing I ever opened was Nautilus.  I
never opened Firefox, or anything elses.  Straight boot to the file
manager to copy files.  It's a weird issue to say the least, because I
can't determine why Xorg would be freaking out on large file copying.
If the files finish, the performance is still poor until I reboot the
machine.

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https://bugs.launchpad.net/bugs/1208993

Title:
  Ubuntu slows down and hangs while copying file from/to USB

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