There are some commits from March 4 2016 that are supposed to fix this
problem.
** Package changed: gnome-shell (Ubuntu) => gnome-session (Ubuntu)
** Changed in: gnome-session (Ubuntu)
Importance: Undecided => High
** Changed in: gnome-session (Ubuntu)
Status: Expired => Triaged
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Desktop Bugs, which is subscribed to gnome-session in Ubuntu.
https://bugs.launchpad.net/bugs/1575434
Title:
Shutdown/Restart prompt may stop working
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