I too have this issue with third-party .deb files. I have just installed
16.04 in UEFI with / and /home on their own partitions.

When I booted, I updated my box and was able to install Slack using the 
Software Center. After that, I went to install Chrome and it wouldn't work. 
Now, no third-party .deb files will install through the software center. I am 
able to install any default package from the Ubuntu Software Center but I am 
not able to install any .deb files unless I manually install them using: 
`sudo dpkg -i PATH_TO_DEB_FILE.deb`

I have fully updated my system after a fresh install. I ran:

```
sudo apt update
Ign:1 http://dl.google.com/linux/chrome/deb stable InRelease
Hit:2 http://dl.google.com/linux/chrome/deb stable Release                     
Hit:4 http://us.archive.ubuntu.com/ubuntu xenial InRelease                     
Get:5 http://us.archive.ubuntu.com/ubuntu xenial-updates InRelease [102 kB] 
Get:6 http://security.ubuntu.com/ubuntu xenial-security InRelease [102 kB]
Get:7 http://us.archive.ubuntu.com/ubuntu xenial-backports InRelease [102 kB]  
Fetched 306 kB in 0s (542 kB/s)                                    
Reading package lists... Done
Building dependency tree       
Reading state information... Done
All packages are up to date.
```

```
sudo apt upgrade
Reading package lists... Done
Building dependency tree       
Reading state information... Done
Calculating upgrade... Done
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
```

```
sudo apt dist-upgrade
Reading package lists... Done
Building dependency tree       
Reading state information... Done
Calculating upgrade... Done
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
```


This issue still persists. At this point, I can only install manually.

-- 
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https://bugs.launchpad.net/bugs/1672424

Title:
  Cannot install Debian files outside of the repositories

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