I can only imagine this might be caused by suspend/resume crashing the
gnome-shell process, and then it restarts (almost seamlessly) with a
slightly different config.

Please run this command before and after suspend/resume:

  pidof gnome-shell

Do you find it gives a different answer after wakeup? If so then please
follow these instructions:

https://wiki.ubuntu.com/Bugs/Responses#Missing_a_crash_report_or_having_a_.crash_attachment

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https://bugs.launchpad.net/bugs/1813511

Title:
  Gnome shell extensions disabled at every wakeup after sleep

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