I know this is a late response, but I figured out the issue. Apparently,
when I updated to Ubuntu 18.04, the update was stopped in the middle and
did not finish properly. I ran `sudo dpkg --configure -a` and rebooted,
which fixed the Mouse Keys clicking problem. However, I am not exactly
sure what package was the problem.

Also, the mouse keys was a feature in the standard Settings; it was not
something I custom-configured.

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https://bugs.launchpad.net/bugs/1836123

Title:
  Can Not Click Using Mouse Keys

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