Your settings changes show the super key has been disabled:
b'org.gnome.mutter' b'overlay-key' b"''"
To fix it, run:
gsettings set org.gnome.mutter overlay-key "Super_L"
** Changed in: gnome-shell (Ubuntu)
Status: New => Invalid
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https://bugs.launchpad.net/bugs/2127700
Title:
super key stoped working
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