I have the same issue with Ubuntu 12.04.
I made Comparison between Ubuntu 11.10 and Ubuntu 12.04 against "Shut down". 
Both install (11.10 and 12.04) are in the same PC and both use Lightdm.

1) with Ubuntu 11.10 :

- PC restart : "Shut down" > "Restart"
- At login screen, I press Ctrl+Alt+F1 and check .Xauthority file : 
ls -l .Xauthority
-rw------- 1 malbo malbo 0 2012-05-25 11:39 .Xauthority

- I press Ctrl + Alt + F7 to return to login screen and log  in. Since my 
graphic session, I check .Xauthority :
ls -l .Xauthority
-rw------- 1 malbo malbo 67 2012-05-25 11:41 .Xauthority  



2) with Ubuntu 12.04

- PC restart : "Shut down" > "Restart"
- At login screen, I press Ctrl+Alt+F1 and check .Xauthority file : 
ls -l .Xauthority
-rw------- 1 malbo malbo 51 mai   25 11:57 .Xauthority

- I press Ctrl + Alt + F7 to return to login screen and log in. Since my 
graphic session, I check .Xauthority :
ls -l .Xauthority
-rw------- 1 malbo malbo 51 mai   25 12:00 .Xauthority

My Comment :
Ubuntu 11.10 works good with "Shut down" : .Xauthority file is 0 bytes just 
before the opening session (it goes to 67 bytes after the login).
Ubuntu 12.04 is wrong with "Shut down" : .Xauthority file is not zero byte just 
before the login (it is 51 bytes and I checked
it is in the state of the opening of the previous session)
I think this anomaly is related to the creation of .goutputstream files

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https://bugs.launchpad.net/bugs/984785

Title:
  .goutputstream files polluting $HOME

Status in Light Display Manager:
  New
Status in X.Org X server:
  New
Status in “lightdm” package in Ubuntu:
  Confirmed
Status in “lightdm” source package in Precise:
  Confirmed

Bug description:
  .goutputstream files polluting $HOME.
  Which software or operation is creating these and why?

  ProblemType: Bug
  DistroRelease: Ubuntu 12.04
  Package: xauth 1:1.0.6-1
  ProcVersionSignature: Ubuntu 3.2.0-23.36-generic 3.2.14
  Uname: Linux 3.2.0-23-generic x86_64
  NonfreeKernelModules: nvidia & ati
  ApportVersion: 2.0.1-0ubuntu4
  Architecture: amd64
  Date: Wed Apr 18 13:29:31 2012
  InstallationMedia: Ubuntu 12.04 LTS "Precise Pangolin"
  ProcEnviron:
   PATH=(custom, no user)
   LANG=en_US.UTF-8
   SHELL=/bin/bash
  SourcePackage: xauth
  UpgradeStatus: No upgrade log present (probably fresh install)

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