*** This bug is a duplicate of bug 1003842 ***
    https://bugs.launchpad.net/bugs/1003842

Thomas: 
After doing some more research I found what was causing the VPN DNS resolution 
in my specific scenario.  Based on some comments in bug #959037, I found that 
the bind9 service was installed and running.  After uninstalling bind9 using 
synaptic and restarting the networkmanager service, name to IP resolution began 
working.  Also the file /var/run/nm-dns-dnsmasq.conf showed up and was being 
correctly populated.

Here's what my config files look like now with VPN connection (edited to
protect company security).  Based on your prior response, I'm confused
as to why resolv.conf has more than just the loopback IP.  It works,
though.

/etc/resolv.conf:
# Dynamic resolv.conf(5) file for glibc resolver(3) generated by resolvconf(8)
#     DO NOT EDIT THIS FILE BY HAND -- YOUR CHANGES WILL BE OVERWRITTEN
nameserver {first vpn dns IP addr in network manager}
nameserver {second vpn dns IP addr in network manager}
nameserver 127.0.0.1
search {first vpn search domain in network manager} {second vpn search domain 
in network manager}

/var/run/nm-dns-dnsmasq.conf:
server={first vpn dns IP addr in network manager}
server={second vpn dns IP addr in network manager}

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https://bugs.launchpad.net/bugs/994575

Title:
  dnsmasq does not update nameserver info after network change

Status in “network-manager” package in Ubuntu:
  Confirmed

Bug description:
  I have a VPN set up in Network Manager, which worked well when my
  system was running 11.10.

  After upgrading to 12.04, I've noticed that DNS changes needed by the
  VPN aren't happening.  Hosts that only resolve within the VPN won't
  resolve, and hosts that are supposed to resolve with different IP
  addresses inside the VPN don't.

  I can see the new, proper nameserver configuration in /var/run/nm-dns-
  dnsmasq.conf.  I can resolve properly if I query the name server
  directly, i.e. "host <name-to-resolve> <vpn-dns-server-ip>".  And, if
  I use that IP address instead of the name, I can successfully do
  things like ssh.  But simple resolution appears to still be using the
  old name server.

  At one point, I killed off dnsmasq and wrote a new /etc/resolv.conf
  with the VPN name servers.  That worked, but caused all manner of
  problems later.

  ProblemType: Bug
  DistroRelease: Ubuntu 12.04
  Package: network-manager 0.9.4.0-0ubuntu3
  ProcVersionSignature: Ubuntu 3.2.0-24.37-generic 3.2.14
  Uname: Linux 3.2.0-24-generic x86_64
  ApportVersion: 2.0.1-0ubuntu7
  Architecture: amd64
  Date: Fri May  4 09:04:23 2012
  EcryptfsInUse: Yes
  IfupdownConfig:
   auto lo
   iface lo inet loopback
  InstallationMedia: Ubuntu 11.10 "Oneiric Ocelot" - Release amd64 (20111012)
  IpRoute:
   default via 192.168.50.2 dev eth0  proto static 
   169.254.0.0/16 dev eth0  scope link  metric 1000 
   192.168.50.0/24 dev eth0  proto kernel  scope link  src 192.168.50.222  
metric 1 
   192.168.50.0/24 dev wlan0  proto kernel  scope link  src 192.168.50.106  
metric 2
  NetworkManager.state:
   [main]
   NetworkingEnabled=true
   WirelessEnabled=true
   WWANEnabled=true
   WimaxEnabled=true
  ProcEnviron:
   PATH=(custom, user)
   LANG=en_US.UTF-8
   SHELL=/bin/bash
  RfKill:
   0: phy0: Wireless LAN
        Soft blocked: no
        Hard blocked: no
  SourcePackage: network-manager
  UpgradeStatus: Upgraded to precise on 2012-05-02 (1 days ago)
  nmcli-dev:
   DEVICE     TYPE              STATE         DBUS-PATH                         
         
   eth0       802-3-ethernet    connected     
/org/freedesktop/NetworkManager/Devices/1  
   wlan0      802-11-wireless   connected     
/org/freedesktop/NetworkManager/Devices/0
  nmcli-nm:
   RUNNING         VERSION    STATE           NET-ENABLED   WIFI-HARDWARE   
WIFI       WWAN-HARDWARE   WWAN      
   running         0.9.4.0    connected       enabled       enabled         
enabled    enabled         disabled

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