I can confirm this happens with Virtualbox guest drivers on (guest)
Xubuntu 12.10, running on a host with Virtualbox 4.1.2, Xubuntu 11.10
with Nvidia graphics hardware (on which the Xfce glitch mentioned does
not present... :-))

Deleting everything in $HOME/.cache *does not* fix this specific
problem.

Debian testing (Wheezy)'s version, 2:1.12.4-1, is unaffected by this on
Intel graphics hardware *and* on a VirtualBox instance with identical
guest graphics and host machine to the affected Xubuntu release. In the
latter case, the fact that it works is almost certainly wholly due to
Debian's revert of the upstream change introducing this regression as a
fix for debbugs #688908.

In short:

 Unaffected: Xubuntu 11.10 + xorg 2:1.10.4-1ubuntu4.3 + xfwm4 4.8.2-0ubuntu1 + 
nvidia-current 280.13-0ubuntu6.2
 Affected: Xubuntu 12.10 + xorg 2:1.13.0-0ubuntu6 + xfwm4 4.10.0-2ubuntu1 + 
virtualbox-guest-x11 4.1.18-dfsg-1ubuntu1
 Unaffected: Debian wheezy (testing current) + xorg 2:1.12.4-1 + xfwm4 4.8.3-2 
+ xserver-xorg-video-intel (2:2.19.0-6)
 Unaffected: Debian wheezy (testing current) + xorg 2:1.12.4-1 + xfwm4 4.8.3-2 
+ virtualbox-guest-x11 4.1.18-dfsg-1.1

Hopefully the Debian solution will be forwardported into Xubuntu at some
point, or upstream will address it and we'll get the fix that way.

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You received this bug notification because you are a member of Desktop
Packages, which is subscribed to xorg-server in Ubuntu.
https://bugs.launchpad.net/bugs/1043575

Title:
  Xubuntu 12.10 + Xorg server 1.13 = Window decoration missing

Status in Xfce4 window manager:
  Unknown
Status in X.Org X server:
  Confirmed
Status in “xorg-server” package in Ubuntu:
  Confirmed
Status in “xorg-server” package in Debian:
  Fix Released

Bug description:
  I'm running Xubuntu 12.10 with the latest updates and certain themes
  that use 1pix window border, like Greybird won't show title bar and
  window borders.

  This problem exists at least with Nvidia drivers, Vmware and Virtual
  Box. And it doesn't exist in a fresh Ubuntu 12.04 with xorg server
  1.11 using the same drivers.

  Other people found the same issues, so I think it's a general thing.
  https://bbs.archlinux.org/viewtopic.php?pid=1152840

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