I can confirm this problem on my ThinkPad T61p under Ubuntu 12.04LTS.

An SD card that is 'loaded' when the system goes to sleep will cause a
new Nautilus window to be opened when the system resumes from sleep.

I have checked my /var/log/kern.log and have found this:

Jan 15 17:20:17 T61p kernel: [32912.339063] mmc0: card 1234 removed

So it appears that the kernel is unloading the card when it goes to
sleep.

Later in the same log file I found this:

Jan 15 18:24:32 T61p kernel: [32916.169311] mmc0: new high speed SD card
at address 1234

So it is clear that Nautilus 'sees' the card as being inserted upon
wakeup.  The bug seems not with Nautilus, but with the Kernel.  BUT:  <<
IS IT A BUG OR A FEATURE ? >>

Mike

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You received this bug notification because you are a member of Desktop
Packages, which is subscribed to nautilus in Ubuntu.
https://bugs.launchpad.net/bugs/272557

Title:
  Leaving an SD card in the slot when suspending creates a nautilus
  window on awake

Status in “nautilus” package in Ubuntu:
  Confirmed

Bug description:
  Binary package hint: nautilus

  If an SD card is present in the laptop card-reader while suspending,
  then a full screen nautilus window is open on the active workspace
  when the session is resumed irrespective of whether or not there was a
  nautilus window on the desktop while suspending.

  Due to this bug [ https://bugs.launchpad.net/bugs/160264 ], the window
  is completely white.

To manage notifications about this bug go to:
https://bugs.launchpad.net/ubuntu/+source/nautilus/+bug/272557/+subscriptions

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