This bug was fixed in the package unity - 6.12.0daily13.02.26-0ubuntu1

---------------
unity (6.12.0daily13.02.26-0ubuntu1) raring; urgency=low

  [ Andrea Azzarone ]
  * Multi-monitor - Panel and launcher visible on top of multimonitor
    non-focused fullscreen apps (LP: #748539)
  * unity.tests.launcher.test_icon_behavior.LauncherIconsTests.* fails
    randomly (LP: #1131679)

  [ Xiao-Long Chen ]
  * Add timeout before removing launcher (LP: #1119801)

  [ MC Return ]
  * cppcheck reports true positives (LP: #1131152)

  [ Automatic PS uploader ]
  * Automatic snapshot from revision 3171
 -- Automatic PS uploader <[email protected]>   Tue, 26 Feb 2013 
04:02:40 +0000

** Changed in: unity (Ubuntu)
       Status: Fix Committed => Fix Released

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https://bugs.launchpad.net/bugs/1119801

Title:
  Add timeout before removing launcher

Status in Unity:
  Fix Committed
Status in Unity for Arch:
  Fix Released
Status in “unity” package in Ubuntu:
  Fix Released

Bug description:
  Please add a timeout to the G_FILE_MONITOR_EVENT_DELETED event before
  actually removing the icon from the launcher. This is necessary for
  some package managers, whose upgrade processes work differently from
  dpkg.

  dpkg upgrade process:
  ********************************
  Install /usr/share/applications/something.desktop.dpkg-new
  Move /usr/share/applications/something.desktop.dpkg-new to 
/usr/share/applications/something.desktop
  ********************************

  Arch's pacman upgrade progress:
  ********************************
  Remove /usr/share/applications/something.desktop
  Install /usr/share/applications/something.desktop
  ********************************

  This causes launcher icons to disappear whenever packages are updated.
  A timeout would help alleviate this issue.

  Btw, the discussion took place on the unity-dev mailing list here:
  https://lists.launchpad.net/unity-dev/msg00594.html

  I'd also like to point out that this patch was not written by me. It
  was written by Marco Trevisan :)

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