I have the same issue on my machine using the AMD Radeon HD 5000 Series.

Any updates on this issue?

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https://bugs.launchpad.net/bugs/1069087

Title:
  twinkling black lines

Status in “fglrx-installer” package in Ubuntu:
  Confirmed

Bug description:
  Black lines on the screen flickering/twinkling. Just at the time of
  initiation before entering the session, I see a lot of these lines.
  Then it stops and there is only one. This line never goes away during
  the session. Rarely I can start without the lines appear. These began
  to appear on October 18 this year, along with upgrading to Ubuntu
  12.10 from Beta 2. When start in Windows 7 I have not this problem.

  ProblemType: Bug
  DistroRelease: Ubuntu 12.10
  Package: xorg 1:7.7+1ubuntu4
  ProcVersionSignature: Ubuntu 3.5.0-17.28-generic 3.5.5
  Uname: Linux 3.5.0-17-generic x86_64
  NonfreeKernelModules: fglrx
  .tmp.unity.support.test.0:
   
  ApportVersion: 2.6.1-0ubuntu3
  Architecture: amd64
  CompizPlugins: No value set for 
`/apps/compiz-1/general/screen0/options/active_plugins'
  CompositorRunning: compiz
  Date: Sat Oct 20 10:56:14 2012
  DistUpgraded: Fresh install
  DistroCodename: quantal
  DistroVariant: ubuntu
  DkmsStatus: fglrx, 9.000, 3.5.0-17-generic, x86_64: installed
  ExtraDebuggingInterest: Yes
  GraphicsCard:
   Advanced Micro Devices [AMD] nee ATI PITCAIRN [Radeon HD 7800] [1002:6818] 
(prog-if 00 [VGA controller])
     Subsystem: Advanced Micro Devices [AMD] nee ATI Device [1002:0b04]
  InstallationMedia: Ubuntu 12.10 "Quantal Quetzal" - Beta amd64 (20120926)
  MachineType: Dell Inc. XPS 8500
  ProcKernelCmdLine: BOOT_IMAGE=/boot/vmlinuz-3.5.0-17-generic 
root=UUID=b6103846-6b0b-4bae-91b7-80178c272a3a ro quiet splash vt.handoff=7
  SourcePackage: xorg
  Symptom: display
  UpgradeStatus: No upgrade log present (probably fresh install)
  dmi.bios.date: 05/25/2012
  dmi.bios.vendor: Dell Inc.
  dmi.bios.version: A06
  dmi.board.name: 0YJPT1
  dmi.board.vendor: Dell Inc.
  dmi.board.version: A00
  dmi.chassis.type: 3
  dmi.chassis.vendor: Dell Inc.
  dmi.modalias: 
dmi:bvnDellInc.:bvrA06:bd05/25/2012:svnDellInc.:pnXPS8500:pvr:rvnDellInc.:rn0YJPT1:rvrA00:cvnDellInc.:ct3:cvr:
  dmi.product.name: XPS 8500
  dmi.sys.vendor: Dell Inc.
  version.compiz: compiz 1:0.9.8.4-0ubuntu3
  version.fglrx-installer: fglrx-installer N/A
  version.ia32-libs: ia32-libs 20090808ubuntu36
  version.libdrm2: libdrm2 2.4.39-0ubuntu1
  version.libgl1-mesa-dri: libgl1-mesa-dri 9.0-0ubuntu1
  version.libgl1-mesa-dri-experimental: libgl1-mesa-dri-experimental N/A
  version.libgl1-mesa-glx: libgl1-mesa-glx 9.0-0ubuntu1
  version.xserver-xorg-core: xserver-xorg-core 2:1.13.0-0ubuntu6
  version.xserver-xorg-input-evdev: xserver-xorg-input-evdev 1:2.7.3-0ubuntu2
  version.xserver-xorg-video-ati: xserver-xorg-video-ati 
1:6.99.99~git20120913.8637f772-0ubuntu1
  version.xserver-xorg-video-intel: xserver-xorg-video-intel 2:2.20.9-0ubuntu2
  version.xserver-xorg-video-nouveau: xserver-xorg-video-nouveau 
1:1.0.2-0ubuntu3

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