I'm affected by this issue in all LibreOffice Versions.
Surprise - the bug is still alive in V4.1 Beta 1 !!!

The bug affects not only the PDF export, it is in the drawn objects
itself:

1. Open Draw
2. Draw a circle

IMPORTANT: You have to turn OFF antialiasing to see the two dots.

3. Now you can see two dots (upper left and lower right).

You see, the dots are present in LibO already (and of course after
export it to pdf.

That the dots are really there you can do following:
4. Select the circle and convert it in a polygon.
5. Enter the dot edit mode

Now you can see, you can edit, move and delete these dots.
This is the evidence that these dots are physically there.
Deleting these dots is a workaround if you need those objects.
I believe these dots are in ALL predefined shapes, also in squares and 
rectangles.

I found this dot-bug in LibO 3.3.4 - 4.1 beta 1
ApacheOpenOffice V3.4.1 and OpenOffice 3.2.0 are not affected by this bug!

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https://bugs.launchpad.net/bugs/689349

Title:
  [Upstream] Draw file exported to PDF have erroneous pixel-sized dots
  in Acroread, not in Evince

Status in LibreOffice Productivity Suite:
  Confirmed
Status in “libreoffice” package in Ubuntu:
  Triaged
Status in “openoffice.org” package in Ubuntu:
  Won't Fix

Bug description:
  Binary package hint: openoffice.org
  Binary package hint: libreoffice

  1) lsb_release -rd
  Description:  Ubuntu 12.10
  Release:      12.10

  2) apt-cache policy libreoffice-draw
  libreoffice-draw:
    Installed: 1:3.6.2~rc2-0ubuntu4
    Candidate: 1:3.6.2~rc2-0ubuntu4
    Version table:
   *** 1:3.6.2~rc2-0ubuntu4 0
          900 http://archive.ubuntu.com/ubuntu/ quantal-updates/main i386 
Packages
          400 http://archive.ubuntu.com/ubuntu/ quantal-proposed/main i386 
Packages
          100 /var/lib/dpkg/status
       1:3.6.2~rc2-0ubuntu3 0
          500 http://archive.ubuntu.com/ubuntu/ quantal/main i386 Packages

  apt-cache policy acroread
  acroread:
    Installed: 9.5.1-1precise1
    Candidate: 9.5.1-1precise1
    Version table:
   *** 9.5.1-1precise1 0
          100 /var/lib/dpkg/status

  apt-cache policy evince
  evince:
    Installed: 3.6.0-0ubuntu2
    Candidate: 3.6.0-0ubuntu2
    Version table:
   *** 3.6.0-0ubuntu2 0
          500 http://archive.ubuntu.com/ubuntu/ quantal/main i386 Packages
          100 /var/lib/dpkg/status

  3) What is expected to happen is when one performs at the Terminal:
  cd ~/Desktop && wget 
https://bugs.launchpad.net/ubuntu/+source/openoffice.org/+bug/689349/+attachment/1763870/+files/classnetwork.odg
 && unoconv --listener && unoconv -f pdf classnetwork.odg && acroread 
classnetwork.pdf

  is it looks as it does in Evince.

  4) What happens instead is acroread displays erroneous pixel-sized
  dots as per screenshot
  
https://bugs.launchpad.net/ubuntu/+source/openoffice.org/+bug/689349/+attachment/1763844/+files/garbagescreenshot.png
  , while evince does not.

  First reproduced in Maverick 1:3.3.1-1ubuntu3~maverick1, and
  reproduced in Natty, and Precise.

  Unconfirmed OOo WORKAROUND: The upstream version does _not_ produce
  these effects and is fine.

  ApportVersion: 2.6.1-0ubuntu6
  Architecture: i386
  CheckboxSubmission: 30b6638832e19720cfe8f7a91e5798a4
  CheckboxSystem: 2954e74ba17fb0e37fc942cd1d9fab4e
  DistroRelease: Ubuntu 12.10
  InstallationDate: Installed on 2012-06-11 (164 days ago)
  InstallationMedia: Xubuntu 12.04 "Precise Pangolin" - Alpha i386 (20120131.1)
  MarkForUpload: True
  Package: libreoffice 1:3.6.2~rc2-0ubuntu4
  PackageArchitecture: i386
  ProcEnviron:
   LANGUAGE=en_US:en
   TERM=xterm
   PATH=(custom, no user)
   LANG=en_US.UTF-8
   SHELL=/bin/bash
  ProcVersionSignature: Ubuntu 3.5.0-17.28-generic 3.5.5
  Tags: quantal
  Uname: Linux 3.5.0-17-generic i686
  UpgradeStatus: Upgraded to quantal on 2012-09-14 (68 days ago)
  UserGroups: adm cdrom dip lpadmin plugdev sambashare sudo

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