I have the same problem after upgrading to Ubuntu Gnome3 13.10 amd64

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https://bugs.launchpad.net/bugs/992373

Title:
  Touchpad stops working after switching users

Status in “xserver-xorg-input-synaptics” package in Ubuntu:
  New

Bug description:
  The touchpad stops working after switching users. I am not sure if
  this is the syaptics input, or X server.

  Description:  Ubuntu 12.04 LTS
  Release:      12.04

  xserver-xorg-input-synaptics:
    Installed: 1.5.99.902-0ubuntu5
    Candidate: 1.5.99.902-0ubuntu5
    Version table:
   *** 1.5.99.902-0ubuntu5 0
          500 http://us.archive.ubuntu.com/ubuntu/ precise/main amd64 Packages
          100 /var/lib/dpkg/status

  
  xserver-xorg:
    Installed: 1:7.6+12ubuntu1
    Candidate: 1:7.6+12ubuntu1
    Version table:
   *** 1:7.6+12ubuntu1 0
          500 http://us.archive.ubuntu.com/ubuntu/ precise/main amd64 Packages
          100 /var/lib/dpkg/status

  Expected behavior: I should be able to use the touchpad as a pointing device 
after switching users
  Actual behavior: After switching user the touchpad doesn't move the pointer
  Workaround: "ctrl+alt+sysreq+k" to restart X server, then log back in and 
touchpad works again.

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