This bug was fixed in the package compiz -
1:0.9.11+14.04.20140404-0ubuntu1

---------------
compiz (1:0.9.11+14.04.20140404-0ubuntu1) trusty; urgency=low

  [ Chris Townsend ]
  * Fix issue where Compiz passively grabs all mouse buttons which
    severely affects scrolling in Gtk apps. Now only unconditionally
    grab buttons 1-3 for all windows except the desktop window and only
    grab other buttons when there is a modifier attached to it. (LP:
    #1171342)
  * Only fade in and fade out a window when it's hidden if it's not in
    Show Desktop mode. This allows for a good fade out effect in Unity
    when exiting Spread while in Show Desktop mode. (LP: #1104236)
 -- Ubuntu daily release <[email protected]>   Fri, 04 Apr 2014 
21:41:53 +0000

** Changed in: compiz (Ubuntu)
       Status: In Progress => Fix Released

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https://bugs.launchpad.net/bugs/1171342

Title:
  mouse scroll wheel not working in gedit & System Monitor

Status in Compiz:
  In Progress
Status in GTK+ GUI Toolkit:
  Fix Released
Status in X.Org X server:
  Confirmed
Status in “compiz” package in Ubuntu:
  Fix Released
Status in “gtk+3.0” package in Ubuntu:
  Fix Released
Status in “xorg-server” package in Ubuntu:
  Won't Fix

Bug description:
  Open System Monitor

  Using mouse wheel button - scroll up or down - list does not move. If
  Press the wheel button and then scroll up or down the list will move.

  This also occurs in Gedit. Firefox and Terminal work as expected. IE
  do not need to press the wheel and then scroll

  Linux kylea-hpxt 3.8.0-19-generic #29-Ubuntu SMP Wed Apr 17 18:16:28 UTC 2013 
x86_64 x86_64 x86_64 GNU/Linux
  Description:  Ubuntu 13.04
  Release:      13.04

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