I can reproduce it on my machine, but this seems to be a bug in ubuntu-
system-service, which is the responsible for writing the proxy settings
in /etc/apt/apt.conf. g-c-c only calls it via DBus, so it's clearly a
bug there?

** Package changed: gnome-control-center (Ubuntu) => ubuntu-system-
service (Ubuntu)

** Changed in: ubuntu-system-service (Ubuntu)
     Assignee: Rodrigo Moya (rodrigo-moya) => (unassigned)

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https://bugs.launchpad.net/bugs/877088

Title:
  Network proxy setting does not set apt.conf from the second time

Status in “ubuntu-system-service” package in Ubuntu:
  Confirmed

Bug description:
  How to reproduce:
    1. open network settings in gnome-control-center
    2. set proxy like the example below:
        * method - manual
        * HTTP Proxy - example.com:8080
        * HTTPS Proxy - example.com:8090
    3. press "Apply system wide"
        - confirm proxy settings are written in /etc/environment and 
/etc/apt/apt.conf
    4. turn off proxy by set back the Method to "None" and press "Apply system 
wide" again.
        - confirm proxy settings are gone from /etc/environment and 
/etc/apt/apt.conf
    5. set proxy again as well as step. 2, then press "Apply system wide" again.

  Expected to happen:
    6. proxy settings are written in /etc/environment and /etc/apt/apt.conf

  What happened instead:
    6. proxy settings are written in only /etc/environment, then 
/etc/apt/apt.conf remains as blank.

  ProblemType: Bug
  DistroRelease: Ubuntu 11.10
  Package: gnome-control-center 1:3.2.0-0ubuntu6
  ProcVersionSignature: Ubuntu 3.0.0-12.20-generic 3.0.4
  Uname: Linux 3.0.0-12-generic x86_64
  ApportVersion: 1.23-0ubuntu3
  Architecture: amd64
  CasperVersion: 1.285
  Date: Tue Oct 18 05:07:00 2011
  LiveMediaBuild: Ubuntu 11.10 "Oneiric Ocelot" - Release amd64 (20111011)
  ProcEnviron:
   LANG=en_US.UTF-8
   SHELL=/bin/bash
  SourcePackage: gnome-control-center
  UpgradeStatus: No upgrade log present (probably fresh install)
  usr_lib_gnome-control-center:
   deja-dup           20.0-0ubuntu3
   gnome-bluetooth    3.2.0-0ubuntu1
   indicator-datetime 0.3.0-0ubuntu3

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