I just want to add that it also does not know how to handle held
packages. I currently have the MongoDB PPA added to my system and
explicitly held the 3.0.10 packages for the M102 course I just
completed.

This is normally done with:

sudo apt-get update
sudo apt-get install -y mongodb-org=3.0.10 mongodb-org-server=3.0.10 
mongodb-org-shell=3.0.10 mongodb-org-mongos=3.0.10 mongodb-org-tools=3.0.10

echo "mongodb-org hold" | sudo dpkg --set-selections
echo "mongodb-org-server hold" | sudo dpkg --set-selections
echo "mongodb-org-shell hold" | sudo dpkg --set-selections
echo "mongodb-org-mongos hold" | sudo dpkg --set-selections
echo "mongodb-org-tools hold" | sudo dpkg --set-selections

sudo apt-get upgrade   
Reading package lists... Done
Building dependency tree       
Reading state information... Done
Calculating upgrade... Done
The following packages have been kept back:
  mongodb-org mongodb-org-mongos mongodb-org-server mongodb-org-shell 
mongodb-org-tools
0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.

If a package is held, it shouldn't really be counted as 1 update in
gnome-software and possibly skipped. At the moment, it tries to update
the packages, reloads then just shows them again as an update.

** Attachment added: "gnome-software.png"
   
https://bugs.launchpad.net/ubuntu/+source/gnome-software/+bug/1575351/+attachment/4657970/+files/gnome-software.png

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You received this bug notification because you are a member of Desktop
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https://bugs.launchpad.net/bugs/1575351

Title:
  tell me I have OS updates and will not install said updates.

Status in Ubuntu GNOME:
  New
Status in Ubuntu GNOME xenial series:
  New
Status in gnome-software package in Ubuntu:
  Triaged

Bug description:
  It tells me I have OS updates to install. When I hit the install
  button it just refreshes as if I have done nothing. It tells me the
  updates are needed for a few things including security. I am using
  Ubuntu Studio. If that helps at all.

  ProblemType: Bug
  DistroRelease: Ubuntu 16.04
  Package: gnome-software 3.20.1+git20160420.1.ca63436.ubuntu-xenial-0ubuntu2
  ProcVersionSignature: Ubuntu 4.4.0-21.37-lowlatency 4.4.6
  Uname: Linux 4.4.0-21-lowlatency x86_64
  NonfreeKernelModules: nvidia
  ApportVersion: 2.20.1-0ubuntu2
  Architecture: amd64
  CurrentDesktop: XFCE
  Date: Tue Apr 26 15:06:13 2016
  InstallationDate: Installed on 2016-04-26 (0 days ago)
  InstallationMedia: It
  SourcePackage: gnome-software
  UpgradeStatus: Upgraded to xenial on 2016-04-26 (0 days ago)

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