Thank you for the answer. I filled a bug here :
https://bugzilla.gnome.org/show_bug.cgi?id=768031

** Bug watch added: GNOME Bug Tracker #768031
   https://bugzilla.gnome.org/show_bug.cgi?id=768031

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https://bugs.launchpad.net/bugs/1595927

Title:
  Impossible to format a USB who contains bootable ISO

Status in gnome-disk-utility package in Ubuntu:
  New

Bug description:
  When you try to format a bootable USB you have the following error :

  This partition cannot be modified because it contains a partition
  table; please reinitialize layout of the whole device. (udisks-error-
  quark, 11)

  and it's impossible to format.

  I think it's related to this bug :
  https://bugs.freedesktop.org/show_bug.cgi?id=76178

  Here another bug details and temporary solution :
  http://askubuntu.com/questions/758219/how-can-i-delete-all-partion-of-
  my-pen-drive-and-create-a-single-volume

  ProblemType: Bug
  DistroRelease: Ubuntu 16.04
  Package: gnome-disk-utility 3.18.3.1-1ubuntu1
  ProcVersionSignature: Ubuntu 4.4.0-24.43-generic 4.4.10
  Uname: Linux 4.4.0-24-generic x86_64
  ApportVersion: 2.20.1-0ubuntu2.1
  Architecture: amd64
  CurrentDesktop: Unity
  Date: Fri Jun 24 13:15:52 2016
  InstallationDate: Installed on 2016-03-26 (90 days ago)
  InstallationMedia: Ubuntu 16.04 LTS "Xenial Xerus" - Beta amd64 (20160323)
  ProcEnviron:
   LANGUAGE=fr_FR
   PATH=(custom, no user)
   XDG_RUNTIME_DIR=<set>
   LANG=fr_FR.UTF-8
   SHELL=/bin/bash
  SourcePackage: gnome-disk-utility
  UpgradeStatus: No upgrade log present (probably fresh install)

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