Figured out how to reproduce this:

Appended screenshot 1 demonstrates how my favorites bar looks like
normally.

When scrolling down with two fingers with the mouse over the bar, the
icons are gone (see screenshot 2).

Icons cannot be called back by reverse scrolling with the mouse cursor
in the favorites bar.

Workaround: Screen-lock and unlock will bring up the fav-bar correctly.


** Attachment added: "Screenshot with fav icons in place"
   
https://bugs.launchpad.net/ubuntu/+source/gnome-session/+bug/1717486/+attachment/4951676/+files/Screenshot%20from%202017-09-17%2013-12-30.png

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https://bugs.launchpad.net/bugs/1717486

Title:
  gnome visual issues

Status in gnome-session package in Ubuntu:
  New

Bug description:
  since the upgrade of gnome-session from 3.25.90 to 3.26.0 I observe
  weird visual phenomena.

  1. Icons in the task bar disappear (and only appear after logout/login)
  2. Windows get drawn with black margins and sometimes with black canvas (gets 
away after a second or so)

  Issue can be related to upgrade of libmutter (libmutter-1-0:amd64
  3.25.91+20170902~ce515c5-1ubuntu1 -> 3.26.0-1)

  ProblemType: Bug
  DistroRelease: Ubuntu 17.10
  Package: gnome-session (not installed)
  ProcVersionSignature: Ubuntu 4.13.0-11.12-generic 4.13.1
  Uname: Linux 4.13.0-11-generic x86_64
  ApportVersion: 2.20.7-0ubuntu1
  Architecture: amd64
  CurrentDesktop: ubuntu:GNOME
  Date: Fri Sep 15 12:33:43 2017
  InstallationDate: Installed on 2017-09-05 (9 days ago)
  InstallationMedia: Ubuntu 17.10 "Artful Aardvark" - Alpha amd64 (20170902)
  SourcePackage: gnome-session
  UpgradeStatus: No upgrade log present (probably fresh install)

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