It appears Ubuntu 18.04 has a much newer version of gnome-shell-
extension-ubuntu-dock. Can you please try that?
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Dock erroneously shows generic icon with org.*.desktop file
Status in gnome-shell package in Ubuntu:
Status in gnome-shell-extension-ubuntu-dock package in Ubuntu:
Launching an application which has a desktop filename of the form
<org.user.application.desktop>, the generic application icon appears
in the dock.
If the desktop filename is changed to the form <application.desktop>,
the icon that appears in the dock is the one specified in the desktop
Ubuntu 17.10 / Wayland
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