Tomaž Vajngerl committed a patch related to this issue.
It has been pushed to "master":

http://cgit.freedesktop.org/libreoffice/core/commit/?id=c3a4dacfa0aae3cf40aa7b123672c6bc197efe0f

tdf#59424 unset open flag O_EXCL if O_CREAT is not set

It will be available in 6.0.0.

The patch should be included in the daily builds available at
http://dev-builds.libreoffice.org/daily/ in the next 24-48 hours. More
information about daily builds can be found at:
http://wiki.documentfoundation.org/Testing_Daily_Builds

Affected users are encouraged to test the fix and report feedback.

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https://bugs.launchpad.net/bugs/1100190

Title:
  [Upstream] I/O Error while opening file from WebDAV over GVFS from
  Nautilus

Status in LibreOffice:
  Confirmed
Status in libreoffice package in Ubuntu:
  Confirmed

Bug description:
  Problem description: 
  Error when opening a file from Nautilus with LibreOffice when the file is 
WebDAV mounted with GVFS.

  The Same file can be opened from the same location from within
  LibreOffice, with the Open File Dialogue. Then you get asked for the
  Username and Password and Libreoffice seems to access the file
  directly over HTTP.

  Steps to reproduce:
  1. Mount a DAV Folder with Nautilus. 
  URL in my Case: 
dav://[email protected]:8080/alfresco/webdav/Sites/puzzletest/documentLibrary/Alfresco%20WebDAV%20Test/
  2. Open a file with LibreOffice by doubleclick or context menu from Nautilus.
  4. Error occurs.
  Exact message:
  (-) «General input/output error while accessing /home/pgassmann/.gvfs/WebDAV\ 
als\ admin\ auf\ 10.1.10.58%3A8080/Sites/puzzletest/documentLibrary/Alfresco\ 
WebDAV\ Test/Neu.odt.» [OK]

  Working Variant:
  1. = 1. above
  2. Start LibreOffice
  3. Open File dialogue from LibreOffice
  4. Select the same file and click Open.
  5. LibreOffice Dialogue: "Authentication Required", Enter user name and 
password for: "Alfresco DAV Server" on 10.1.10.58
  6. Enter Username and password, click OK
  7. File opens correctly

  LibreOffice Version:
  3.5.2-2ubuntu1

  Involved Software: 
  LibreOffice, Nautilus, GVFS, Alfresco

  Current behavior:
  Opening file from Nautilus causes Error,
  Opening from LibreOffice Open File dialogue asks for credentials and works 
correctly

  Expected behavior:
  Opening from Nautilus works.
  Opening from Open File dialog works without asking for credentials.

  Attachment: strace log from following actions:
  LANG=C libreoffice --strace
  successfully Open File from LibreOffice dialogue.
  Trying to open file from Nautilus.

  ProblemType: Bug
  DistroRelease: Ubuntu 12.04
  Package: libreoffice 1:3.5.4-0ubuntu1.1
  ProcVersionSignature: Ubuntu 3.2.0-36.57-generic 3.2.35
  Uname: Linux 3.2.0-36-generic x86_64
  NonfreeKernelModules: nvidia wl
  ApportVersion: 2.0.1-0ubuntu17.1
  Architecture: amd64
  Date: Wed Jan 16 10:05:05 2013
  InstallationMedia: Ubuntu 10.10 "Maverick Meerkat" - Release amd64 (20101007)
  MarkForUpload: True
  SourcePackage: libreoffice
  UpgradeStatus: Upgraded to precise on 2012-05-22 (238 days ago)

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