Thank you for your bug report. Did you get a dialog about file conflicts? There 
is a bug reported upstream which state it can happen in those cases, 
https://gitlab.gnome.org/GNOME/nautilus/-/issues/1327
If not could you maybe open a new report upstream on gitlab?

** Bug watch added: gitlab.gnome.org/GNOME/nautilus/-/issues #1327
   https://gitlab.gnome.org/GNOME/nautilus/-/issues/1327

** Changed in: nautilus (Ubuntu)
   Importance: Undecided => Low

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https://bugs.launchpad.net/bugs/1879468

Title:
  The copy progress shows more number of files copied than the total
  files present for large number of file transfer from external harddisk

Status in nautilus package in Ubuntu:
  New

Bug description:
  Check the attached screenshot, x out of y (denoted by x/y) in copy
  progress is somehow bugged. In this scenario the x goes above y which
  shouldn't be allowed.

  That means that maybe the initial calculation in large number of files
  is bugged. A solution without compromising performance is that as soon
  as you start going up, at the end you also increase the total count
  before actually increasing x. But that would be kind of like a work-
  around.

  The best thing would be to check the counting of actual files copied
  as well as the calculation of initial total number of files during the
  beginning of copy

  ProblemType: Bug
  DistroRelease: Ubuntu 20.04
  Package: nautilus 1:3.36.2-0ubuntu1
  ProcVersionSignature: Ubuntu 5.4.0-29.33-generic 5.4.30
  Uname: Linux 5.4.0-29-generic x86_64
  ApportVersion: 2.20.11-0ubuntu27
  Architecture: amd64
  CasperMD5CheckResult: skip
  CurrentDesktop: ubuntu:GNOME
  Date: Tue May 19 15:00:59 2020
  InstallationDate: Installed on 2020-05-18 (0 days ago)
  InstallationMedia: Ubuntu 20.04 LTS "Focal Fossa" - Release amd64 (20200423)
  ProcEnviron:
   LANGUAGE=en_IN:en
   PATH=(custom, no user)
   XDG_RUNTIME_DIR=<set>
   LANG=en_IN
   SHELL=/bin/bash
  SourcePackage: nautilus
  UpgradeStatus: No upgrade log present (probably fresh install)
  usr_lib_nautilus:

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