This sounds like an upstream bug, potentially. Would you mind filing one
at https://bugzilla.mozilla.org/enter_bug.cgi?product=Thunderbird, with
as many details as possible, and sharing the link to it here?

** Changed in: thunderbird (Ubuntu)
       Status: New => Incomplete

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https://bugs.launchpad.net/bugs/1988271

Title:
  Conversion to maildir fails

Status in thunderbird package in Ubuntu:
  Incomplete

Bug description:
  The conversion of the mail storage format from mbox to maildir for my
  accounts and local folder fails:

  Account Settings -> Local Folders -> Message Storage Type -> File per
  message -> Continue -> Conversion failed

  Thunderbird version is 91.11.0 (64-bit)

  ProblemType: Bug
  DistroRelease: Ubuntu 20.04
  Package: thunderbird 1:91.11.0+build2-0ubuntu0.20.04.1
  ProcVersionSignature: Ubuntu 5.15.0-22.22~20.04.1-generic 5.15.19
  Uname: Linux 5.15.0-22-generic x86_64
  NonfreeKernelModules: zfs zunicode zavl icp zcommon znvpair
  AddonCompatCheckDisabled: False
  ApportVersion: 2.20.11-0ubuntu27.24
  Architecture: amd64
  AudioDevicesInUse:
   USER PID ACCESS COMMAND
   /dev/snd/controlC2:  pia       407619 F.... pulseaudio
   /dev/snd/controlC1:  pia       407619 F.... pulseaudio
   /dev/snd/controlC0:  pia       407619 F.... pulseaudio
  BuildID: 20220628000715
  CasperMD5CheckResult: skip
  Channel: Unavailable
  CurrentDesktop: ubuntu:GNOME
  Date: Wed Aug 31 09:46:32 2022
  DefaultProfileExtensions: extensions.sqlite corrupt or missing
  DefaultProfileIncompatibleExtensions: Unavailable (corrupt or non-existant 
compatibility.ini or extensions.sqlite)
  DefaultProfileLocales: extensions.sqlite corrupt or missing
  DefaultProfilePrefErrors:
   Unexpected character ',' before close parenthesis @ 
/usr/lib/thunderbird/omni.ja:greprefs.js:359
   'utf-8' codec can't decode byte 0xe4 in position 1246: invalid continuation 
byte
  DefaultProfileThemes: extensions.sqlite corrupt or missing
  ForcedLayersAccel: False
  InstallationDate: Installed on 2015-11-05 (2490 days ago)
  InstallationMedia: Ubuntu 14.04.3 LTS "Trusty Tahr" - Beta amd64 (20150805)
  IpRoute:
   default via 141.43.207.254 dev wlp2s0 proto dhcp src 141.43.206.95 metric 
303 
   141.43.204.0/22 dev wlp2s0 proto dhcp scope link src 141.43.206.95 metric 303
  MostRecentCrashID: bp-fd50f7d7-4956-4fdf-863c-4559b0210616
  Profile1Extensions: extensions.sqlite corrupt or missing
  Profile1IncompatibleExtensions: Unavailable (corrupt or non-existant 
compatibility.ini or extensions.sqlite)
  Profile1Locales: extensions.sqlite corrupt or missing
  Profile1PrefErrors: Unexpected character ',' before close parenthesis @ 
/usr/lib/thunderbird/omni.ja:greprefs.js:359
  Profile1PrefSources: prefs.js
  Profile1Prefs:
   extensions.lastAppVersion: "68.4.1" (prefs.js)
   security.sandbox.plugin.tempDirSuffix: 
"9eb2b85f-0d3f-4a8d-befb-123c16cf0c0a" (prefs.js)
  Profile1Themes: extensions.sqlite corrupt or missing
  Profile2Extensions: extensions.sqlite corrupt or missing
  Profile2IncompatibleExtensions: Unavailable (corrupt or non-existant 
compatibility.ini or extensions.sqlite)
  Profile2Locales: extensions.sqlite corrupt or missing
  Profile2Plugins: Shockwave Flash - 
/usr/lib/flashplugin-installer/libflashplayer.so
  Profile2PrefErrors: Unexpected character ',' before close parenthesis @ 
/usr/lib/thunderbird/omni.ja:greprefs.js:359
  Profile2PrefSources: prefs.js
  Profile2Prefs:
   accessibility.typeaheadfind.flashBar: 0 (prefs.js)
   extensions.lastAppVersion: "68.2.2" (prefs.js)
   places.history.expiration.transient_current_max_pages: 112348 (prefs.js)
   security.sandbox.plugin.tempDirSuffix: 
"f8e1a9f8-d09f-45f0-9e5e-e552e5fa973e" (prefs.js)
  Profile2Themes: extensions.sqlite corrupt or missing
  Profiles:
   Profile2 - LastVersion=68.2.2/20191201113928 (Out of date)
   Profile1 - LastVersion=68.4.1/20200108224327 (Out of date)
   Profile0 (Default) - LastVersion=91.11.0/20220628000715 (In use)
  RunningIncompatibleAddons: False
  SourcePackage: thunderbird
  UpgradeStatus: Upgraded to focal on 2020-09-10 (719 days ago)
  dmi.bios.date: 05/03/2020
  dmi.bios.release: 1.4
  dmi.bios.vendor: LENOVO
  dmi.bios.version: R1AET28W (1.04 )
  dmi.board.asset.tag: Not Available
  dmi.board.name: 20T6000MGE
  dmi.board.vendor: LENOVO
  dmi.board.version: Not Defined
  dmi.chassis.asset.tag: No Asset Information
  dmi.chassis.type: 10
  dmi.chassis.vendor: LENOVO
  dmi.chassis.version: None
  dmi.ec.firmware.release: 1.4
  dmi.modalias: 
dmi:bvnLENOVO:bvrR1AET28W(1.04):bd05/03/2020:br1.4:efr1.4:svnLENOVO:pn20T6000MGE:pvrThinkPadE14Gen2:rvnLENOVO:rn20T6000MGE:rvrNotDefined:cvnLENOVO:ct10:cvrNone:skuLENOVO_MT_20T6_BU_Think_FM_ThinkPadE14Gen2:
  dmi.product.family: ThinkPad E14 Gen 2
  dmi.product.name: 20T6000MGE
  dmi.product.sku: LENOVO_MT_20T6_BU_Think_FM_ThinkPad E14 Gen 2
  dmi.product.version: ThinkPad E14 Gen 2
  dmi.sys.vendor: LENOVO
  mtime.conffile..etc.apport.crashdb.conf: 2019-03-07T14:28:39.455024

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