Public bug reported:

I think gedit has problem opening Protein Data Bank files (.pdb)

If gedit is launched from the terminal this two messages appear when
gedit hangs

(gedit:1969): GtkSourceView-WARNING **: Could not find word to remove in
buffer (THR), this should not happen!

(gedit:1969): GtkSourceView-WARNING **: Could not find word to remove in
buffer (ATOM), this should not happen!

"THR" and "ATOM" are strings present in the .pbd files


gedit become unresponsive and in few seconds the memory usage of gedit is more 
than 1 Gb (according to system monitor) and hence all programs become 
unresponsive. The only "solution" is to kill gedit or force shutdown of Ubuntu. 
The problem seems to be random and not related to the size of the file. 
Reloading and open file also (sometimes) hangs gedit.

ProblemType: Bug
DistroRelease: Ubuntu 11.10
Package: gedit 3.2.3-0ubuntu0.1
ProcVersionSignature: Ubuntu 3.0.0-15.26-generic 3.0.13
Uname: Linux 3.0.0-15-generic x86_64
ApportVersion: 1.23-0ubuntu4
Architecture: amd64
Date: Sun Feb 12 21:45:43 2012
ExecutablePath: /usr/bin/gedit
InstallationMedia: Ubuntu 11.04 "Natty Narwhal" - Release amd64 (20110427.1)
SourcePackage: gedit
UpgradeStatus: Upgraded to oneiric on 2011-10-14 (121 days ago)

** Affects: gedit (Ubuntu)
     Importance: Undecided
         Status: New


** Tags: amd64 apport-bug oneiric running-unity

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https://bugs.launchpad.net/bugs/931213

Title:
  gedit hangs opening .pdb files

Status in “gedit” package in Ubuntu:
  New

Bug description:
  I think gedit has problem opening Protein Data Bank files (.pdb)

  If gedit is launched from the terminal this two messages appear when
  gedit hangs

  (gedit:1969): GtkSourceView-WARNING **: Could not find word to remove
  in buffer (THR), this should not happen!

  (gedit:1969): GtkSourceView-WARNING **: Could not find word to remove
  in buffer (ATOM), this should not happen!

  "THR" and "ATOM" are strings present in the .pbd files

  
  gedit become unresponsive and in few seconds the memory usage of gedit is 
more than 1 Gb (according to system monitor) and hence all programs become 
unresponsive. The only "solution" is to kill gedit or force shutdown of Ubuntu. 
The problem seems to be random and not related to the size of the file. 
Reloading and open file also (sometimes) hangs gedit.

  ProblemType: Bug
  DistroRelease: Ubuntu 11.10
  Package: gedit 3.2.3-0ubuntu0.1
  ProcVersionSignature: Ubuntu 3.0.0-15.26-generic 3.0.13
  Uname: Linux 3.0.0-15-generic x86_64
  ApportVersion: 1.23-0ubuntu4
  Architecture: amd64
  Date: Sun Feb 12 21:45:43 2012
  ExecutablePath: /usr/bin/gedit
  InstallationMedia: Ubuntu 11.04 "Natty Narwhal" - Release amd64 (20110427.1)
  SourcePackage: gedit
  UpgradeStatus: Upgraded to oneiric on 2011-10-14 (121 days ago)

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