This seems like a hardware problem to me.
Could you please verify that 'rhythmdb.xml' can be edited and saved correctly 
using any editor?
Please also post the output of 'ls -la ~/.local/share/rhythmbox/rhythmdb.xml' 
command
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https://bugs.launchpad.net/bugs/956229

Title:
  rhythmbox does not save added radio stations

Status in The Rhythmbox Music Management Application:
  New
Status in “rhythmbox” package in Ubuntu:
  Triaged

Bug description:
  Any radio stations added to rhythmbox are at first added to the table and are 
playable, but upon exit, they are not written to the rhythmdb.xml file, so that 
they are gone the next time rhythmbox is started. 
  On the terminal, I receive the error "RhythmDB-WARNING **: Can't save XML: 
Input/output error". I checked the access rights of the file, but writing is 
allowed.

  ProblemType: Bug
  DistroRelease: Ubuntu 12.04
  Package: rhythmbox 2.95.5-0ubuntu1
  ProcVersionSignature: Ubuntu 3.2.0-18.29-generic 3.2.9
  Uname: Linux 3.2.0-18-generic i686
  NonfreeKernelModules: openafs
  ApportVersion: 1.94.1-0ubuntu2
  Architecture: i386
  Date: Thu Mar 15 18:19:09 2012
  EcryptfsInUse: Yes
  InstallationMedia: Ubuntu 11.04 "Natty Narwhal" - Beta i386 (20110413)
  SourcePackage: rhythmbox
  UpgradeStatus: Upgraded to precise on 2012-03-12 (2 days ago)

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