Pedro da Silveira created AIRAVATA-755:
------------------------------------------
Summary: Incompatible parameters on HPC Configuration needs
validation process
Key: AIRAVATA-755
URL: https://issues.apache.org/jira/browse/AIRAVATA-755
Project: Airavata
Issue Type: Improvement
Components: GFac, XBaya
Affects Versions: 0.6
Reporter: Pedro da Silveira
Priority: Minor
I setup a workflow to run on Lonestar with the following HPC configuration
Max Wall time: 1440
CPU Count: 64
Node: 6
Processor Per Node: 12
Min Memory: 10240
Max: 15360
It had 4 inputs and one single output. Unfortunately, my workflow task never
got submitted to Lonestar.
The Airavata Server had the error message below:
So, I only changed the parameter from "CPU Count: 64" to "CPU Count: 72" and my
workflow task got submitted to Lonestar correctly.
===========
Error Message
======================================================================
[INFO] -----DATA-----
[INFO]
https://gridftp1.ls4.tacc.utexas.edu:50393/16289878754566973521/8943296923859968446/
[INFO] gridftp1.ls4.tacc.utexas.edu:2119/jobmanager-sge
[INFO] null
[INFO] null
[INFO] /C=US/O=National Center for Supercomputing Applications/CN=OGCE
Community User
[INFO] null
[INFO] &( queue = "normal" )( stdout =
"/scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/lonestar_application.stdout"
)( count = "64" )( executable =
"/scratch/01437/ogce/Vlab/Phonon/executePhonon.sh" )( stderr =
"/scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/lonestar_application.stderr"
)( maxwalltime = "1440" )( hostCount = "6" )( minmemory = "10240" )( project =
"TG-STA110014S" )( jobtype = "mpi" )( environment = ( "inputData"
"/scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/inputData"
) ( "outputData"
"/scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/outputData"
) )( proxy_timeout = "1" )( arguments =
"///scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/inputData/Pwscf_Input"
"///scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/inputData/Cd_PON_sp_LDA.vdb"
"///scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/inputData/Te_PON_LDA.vdb"
"///scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/inputData/Phonon_Input"
)( directory =
"/scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3"
)( maxmemory = "15360" )
[INFO] -----END DATA-----
[INFO] Status is zero
[INFO] Status of job
https://gridftp1.ls4.tacc.utexas.edu:50393/16289878754566973521/8943296923859968446/is
FAILED
[INFO] -----DATA-----
[INFO] Status of job
https://gridftp1.ls4.tacc.utexas.edu:50393/16289878754566973521/8943296923859968446/is
FAILED
[INFO] -----END DATA-----
[INFO] Job Error Code: 14
[ERROR] Context passed was NULL.
java.lang.RuntimeException: Context passed was NULL.
at
org.apache.airavata.workflow.tracking.impl.ProvenanceNotifierImpl.sendingFault(ProvenanceNotifierImpl.java:496)
at
org.apache.airavata.workflow.tracking.impl.ProvenanceNotifierImpl.sendingFault(ProvenanceNotifierImpl.java:485)
at
org.apache.airavata.core.gfac.notification.impl.WorkflowTrackingNotification.executionFail(WorkflowTrackingNotification.java:108)
at
org.apache.airavata.core.gfac.notification.impl.DefaultNotifier.executionFail(DefaultNotifier.java:135)
at
org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:225)
at
org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
at
org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
at
org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
at java.lang.Thread.run(Thread.java:680)
[INFO] -----DATA-----
[INFO] Job Protocol : https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50393
Url path : 16289878754566973521/8943296923859968446/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 14
[INFO] -----END DATA-----
[ERROR] Job Protocol : https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50393
Url path : 16289878754566973521/8943296923859968446/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 14
org.apache.airavata.core.gfac.exception.JobSubmissionFault: Job Protocol :
https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50393
Url path : 16289878754566973521/8943296923859968446/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 14
at
org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:222)
at
org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
at
org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
at
org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
at java.lang.Thread.run(Thread.java:680)
Caused by: java.lang.Exception: Job Protocol : https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50393
Url path : 16289878754566973521/8943296923859968446/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 14
... 12 more
Exception in thread "Thread-58"
org.apache.airavata.workflow.model.exceptions.WorkflowRuntimeException:
org.apache.airavata.workflow.model.exceptions.WorkflowException: Job Protocol
: https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50393
Url path : 16289878754566973521/8943296923859968446/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 14
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:392)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
at java.lang.Thread.run(Thread.java:680)
Caused by: org.apache.airavata.workflow.model.exceptions.WorkflowException: Job
Protocol : https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50393
Url path : 16289878754566973521/8943296923859968446/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 14
at
org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:321)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
... 3 more
Caused by: org.apache.airavata.core.gfac.exception.JobSubmissionFault: Job
Protocol : https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50393
Url path : 16289878754566973521/8943296923859968446/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 14
at
org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:222)
at
org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
at
org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
at
org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
... 7 more
Caused by: java.lang.Exception: Job Protocol : https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50393
Url path : 16289878754566973521/8943296923859968446/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 14
... 12 more
======================================================================
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