Pedro da Silveira created AIRAVATA-756:
------------------------------------------
Summary: Error message on Airavata Server and Xbaya, even thought,
job ran successfully after 17 hours.
Key: AIRAVATA-756
URL: https://issues.apache.org/jira/browse/AIRAVATA-756
Project: Airavata
Issue Type: Bug
Components: Distribution, GFac, XBaya
Environment: Mac OS 10.5.8
Processor: 2 x 2.8GHz Quad-Core Intel Xeon
Memory 8G 800 Mhz DDR2
Java 1.6.0_26
Reporter: Pedro da Silveira
Priority: Minor
Fix For: 0.6
After I fixed the problem on my local firewall with the suggestion made by
Raminderjeet Singh to let the ports # from from 40,000 to 40,100 open to
Airavata Server, I don't received the message "Status 0" anymore.
Although, I am still getting an error message on my Airavata-Server and a red
alert on Xbaya as informing that my job failed, but reality is that my job ran
successfully.
This task took 17 hours to finish with 3 inputs in one application service.
According to Raminderjeet Singh, if I change the myproxy.life=3600 in
airavata-server.properties to myproxy.life=172800, I won't get this error
message anymore.
==========================
Error message on Airavata-Server:
==========================
[INFO] job
https://gridftp1.ls4.tacc.utexas.edu:50393/16289883153825569046/8943296923859945130/
have same status: ACTIVE
[INFO] job
https://gridftp1.ls4.tacc.utexas.edu:50393/16289883153825569046/8943296923859945130/
have same status: ACTIVE
[INFO] job
https://gridftp1.ls4.tacc.utexas.edu:50393/16289883153825569046/8943296923859945130/
have same status: ACTIVE
[INFO] job
https://gridftp1.ls4.tacc.utexas.edu:50393/16289883153825569046/8943296923859945130/
have same status: ACTIVE
[INFO] job
https://gridftp1.ls4.tacc.utexas.edu:50393/16289883153825569046/8943296923859945130/
have same status: ACTIVE
[INFO] job
https://gridftp1.ls4.tacc.utexas.edu:50393/16289883153825569046/8943296923859945130/
have same status: ACTIVE
[INFO] job
https://gridftp1.ls4.tacc.utexas.edu:50393/16289883153825569046/8943296923859945130/
have same status: ACTIVE
[INFO] job
https://gridftp1.ls4.tacc.utexas.edu:50393/16289883153825569046/8943296923859945130/
have same status: ACTIVE
[INFO] job
https://gridftp1.ls4.tacc.utexas.edu:50393/16289883153825569046/8943296923859945130/
have same status: ACTIVE
[INFO] job
https://gridftp1.ls4.tacc.utexas.edu:50393/16289883153825569046/8943296923859945130/
have same status: ACTIVE
[INFO] job
https://gridftp1.ls4.tacc.utexas.edu:50393/16289883153825569046/8943296923859945130/
have same status: ACTIVE
[INFO] Job proxy expired. Trying to renew proxy
org.globus.gsi.gssapi.GlobusGSSCredentialImpl@453931d9
[INFO] Proxy file renewed to
/tmp/x509up_uogcebb9f81ba-8f59-4fec-b776-331c3f21bb62 for the user ogce with
3600 lifetime.
[ERROR] Context passed was NULL.
java.lang.RuntimeException: Context passed was NULL.
at
org.apache.airavata.workflow.tracking.impl.ProvenanceNotifierImpl.sendingFault(ProvenanceNotifierImpl.java:496)
at
org.apache.airavata.workflow.tracking.impl.ProvenanceNotifierImpl.sendingFault(ProvenanceNotifierImpl.java:485)
at
org.apache.airavata.core.gfac.notification.impl.WorkflowTrackingNotification.executionFail(WorkflowTrackingNotification.java:108)
at
org.apache.airavata.core.gfac.notification.impl.DefaultNotifier.executionFail(DefaultNotifier.java:135)
at
org.apache.airavata.core.gfac.exception.JobSubmissionFault.sendFaultNotification(JobSubmissionFault.java:52)
at
org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:231)
at
org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
at
org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
at
org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
at java.lang.Thread.run(Thread.java:680)
[INFO] -----DATA-----
[INFO] lonestar4.tacc.teragrid.org,&( queue = "normal" )( stdout =
"/scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_20_00_56_CST_2013_78f5e160-e1df-4008-b02b-53edfa6edbd3/lonestar_application.stdout"
)( count = "72" )( executable =
"/scratch/01437/ogce/Vlab/Phonon/executePhonon.sh" )( stderr =
"/scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_20_00_56_CST_2013_78f5e160-e1df-4008-b02b-53edfa6edbd3/lonestar_application.stderr"
)( maxwalltime = "1440" )( hostCount = "6" )( minmemory = "10240" )( project =
"TG-STA110014S" )( jobtype = "mpi" )( environment = ( "inputData"
"/scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_20_00_56_CST_2013_78f5e160-e1df-4008-b02b-53edfa6edbd3/inputData"
) ( "outputData"
"/scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_20_00_56_CST_2013_78f5e160-e1df-4008-b02b-53edfa6edbd3/outputData"
) )( proxy_timeout = "1" )( arguments =
"///scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_20_00_56_CST_2013_78f5e160-e1df-4008-b02b-53edfa6edbd3/inputData/Pwscf_Input"
"///scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_20_00_56_CST_2013_78f5e160-e1df-4008-b02b-53edfa6edbd3/inputData/Cd_PON_sp_LDA.vdb"
"///scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_20_00_56_CST_2013_78f5e160-e1df-4008-b02b-53edfa6edbd3/inputData/Te_PON_LDA.vdb"
"///scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_20_00_56_CST_2013_78f5e160-e1df-4008-b02b-53edfa6edbd3/inputData/Phonon_Input"
)( directory =
"/scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_20_00_56_CST_2013_78f5e160-e1df-4008-b02b-53edfa6edbd3"
)( maxmemory = "15360" )
[INFO] -----END DATA-----
[ERROR] The connection to the server failed (check host and port) [Caused by:
Connection refused]
org.apache.airavata.core.gfac.exception.JobSubmissionFault: The connection to
the server failed (check host and port) [Caused by: Connection refused]
at
org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:229)
at
org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
at
org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
at
org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
at java.lang.Thread.run(Thread.java:680)
Caused by: org.globus.gram.GramException: The connection to the server failed
(check host and port) [Caused by: Connection refused]
at org.globus.gram.Gram.renew(Gram.java:595)
at org.globus.gram.GramJob.renew(GramJob.java:329)
at org.globus.gram.GramJob.renew(GramJob.java:315)
at
org.apache.airavata.core.gfac.provider.utils.JobSubmissionListener.waitFor(JobSubmissionListener.java:72)
at
org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:206)
... 11 more
Exception in thread "Thread-98"
org.apache.airavata.workflow.model.exceptions.WorkflowRuntimeException:
org.apache.airavata.workflow.model.exceptions.WorkflowException: The connection
to the server failed (check host and port) [Caused by: Connection refused]
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:392)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
at java.lang.Thread.run(Thread.java:680)
Caused by: org.apache.airavata.workflow.model.exceptions.WorkflowException: The
connection to the server failed (check host and port) [Caused by: Connection
refused]
at
org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:321)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
... 3 more
Caused by: org.apache.airavata.core.gfac.exception.JobSubmissionFault: The
connection to the server failed (check host and port) [Caused by: Connection
refused]
at
org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:229)
at
org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
at
org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
at
org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
... 7 more
Caused by: org.globus.gram.GramException: The connection to the server failed
(check host and port) [Caused by: Connection refused]
at org.globus.gram.Gram.renew(Gram.java:595)
at org.globus.gram.GramJob.renew(GramJob.java:329)
at org.globus.gram.GramJob.renew(GramJob.java:315)
at
org.apache.airavata.core.gfac.provider.utils.JobSubmissionListener.waitFor(JobSubmissionListener.java:72)
at
org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:206)
... 11 more
^[[B
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