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https://issues.apache.org/jira/browse/AIRAVATA-819?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Heshan Suriyaarachchi updated AIRAVATA-819:
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Description:
Let me explain what I've meant here.
In case of a usecase like gene sequence alignment, you might give 1000s of gene
sequences as the input. In a situation like that, what we have to do is to have
comma separated string with the inputs. In my usecase, it's not practical
because a single sequence strand is having a substantial length. Therefore, I
think it'll be easier for the user, if we provide a mechanism where the user
can give the input as a file and instead of the comma delimiter, we could use a
"new line".
This is something which I felt needed when doing some testing with the
EC2Provider.
was:
Let me explain what I've meant here.
In case of a usecase like gene sequence alignment, you might give 1000s of gene
sequences as the input. In a situation like that, in the current trunk what we
have to do is to have comma seperated string with the inputs. In the usecase
that I mentioned. It's not that practical because a single sequence strand is
having a substantial length. Therefore, I think it'll be easier for the user,
if we provide a mechanisam where the user can give the input as a file and
instead of the comma delimeter, we could use a "new line".
This is something which I felt needed when doing some testing with the
EC2Provider.
> Support the workflows with forEach inputs to get inputs from file
> -----------------------------------------------------------------
>
> Key: AIRAVATA-819
> URL: https://issues.apache.org/jira/browse/AIRAVATA-819
> Project: Airavata
> Issue Type: Improvement
> Affects Versions: 0.7
> Reporter: Heshan Suriyaarachchi
> Fix For: 0.8
>
>
> Let me explain what I've meant here.
> In case of a usecase like gene sequence alignment, you might give 1000s of
> gene sequences as the input. In a situation like that, what we have to do is
> to have comma separated string with the inputs. In my usecase, it's not
> practical because a single sequence strand is having a substantial length.
> Therefore, I think it'll be easier for the user, if we provide a mechanism
> where the user can give the input as a file and instead of the comma
> delimiter, we could use a "new line".
> This is something which I felt needed when doing some testing with the
> EC2Provider.
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