Raminderjeet Singh created AIRAVATA-857:
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Summary: Error while trying to query the experiment data after few
hours
Key: AIRAVATA-857
URL: https://issues.apache.org/jira/browse/AIRAVATA-857
Project: Airavata
Issue Type: Bug
Reporter: Raminderjeet Singh
OpenJPA gives error 1st time when i try to query the job status and if i run
the same function again it works fine.
[ERROR] Error while initializing the Airavata API
<openjpa-2.2.0-r422266:1244990 fatal general error>
org.apache.openjpa.persistence.PersistenceException: The last packet
successfully received from the server was 65,137,412 milliseconds ago. The
last packet sent successfully to the server was 65,137,412 milliseconds ago. is
longer than the server configured value of 'wait_timeout'. You should consider
either expiring and/or testing connection validity before use in your
application, increasing the server configured values for client timeouts, or
using the Connector/J connection property 'autoReconnect=true' to avoid this
problem.
at
org.apache.openjpa.jdbc.sql.DBDictionary.narrow(DBDictionary.java:4918)
at
org.apache.openjpa.jdbc.sql.DBDictionary.newStoreException(DBDictionary.java:4878)
at
org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:136)
at
org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:110)
at
org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:62)
at
org.apache.openjpa.jdbc.kernel.JDBCStoreManager.connect(JDBCStoreManager.java:949)
at
org.apache.openjpa.jdbc.kernel.JDBCStoreManager.getConnection(JDBCStoreManager.java:240)
at
org.apache.openjpa.jdbc.kernel.PreparedSQLStoreQuery$PreparedSQLExecutor.executeQuery(PreparedSQLStoreQuery.java:104)
at org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:1005)
at org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:863)
at org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:794)
at
org.apache.openjpa.kernel.DelegatingQuery.execute(DelegatingQuery.java:542)
at org.apache.openjpa.persistence.QueryImpl.execute(QueryImpl.java:286)
at
org.apache.openjpa.persistence.QueryImpl.getResultList(QueryImpl.java:302)
at
org.apache.airavata.persistance.registry.jpa.ResourceUtils.getConfigurations(ResourceUtils.java:206)
at
org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry.getConfigurationList(AiravataJPARegistry.java:156)
at
org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry.retrieveURIsFromConfiguration(AiravataJPARegistry.java:226)
at
org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry.getEventingServiceURI(AiravataJPARegistry.java:249)
at
org.apache.airavata.client.AiravataClient.createConfig(AiravataClient.java:115)
at
org.apache.airavata.client.AiravataClient.initialize(AiravataClient.java:144)
at
org.apache.airavata.client.AiravataAPIFactory.getAPI(AiravataAPIFactory.java:61)
at
org.apache.airavata.client.AiravataAPIFactory.getAPI(AiravataAPIFactory.java:43)
at
org.ogce.gram.job.AiravataJobStatus.getJobStatus(AiravataJobStatus.java:58)
at
org.ogce.gram.job.AiravataJobStatus.gramJobStatus(AiravataJobStatus.java:41)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
com.sun.jersey.spi.container.JavaMethodInvokerFactory$1.invoke(JavaMethodInvokerFactory.java:60)
at
com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$TypeOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:185)
at
com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:75)
at
com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:302)
at
com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at
com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:108)
at
com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
at
com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:84)
at
com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1480)
at
com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1411)
at
com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1360)
at
com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1350)
at
com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:416)
at
com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:538)
at
com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:716)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222)
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
at
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99)
at
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:947)
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at
org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1009)
at
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:589)
at
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:662)
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