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https://issues.apache.org/jira/browse/AIRAVATA-820?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13742862#comment-13742862
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Saminda Wijeratne edited comment on AIRAVATA-820 at 8/17/13 6:33 AM:
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Hi Shinyoung,
There was an issue in the simple foreach workflow as well. I fixed the problem
and tested both the simple/complex foreach example workflows provided (and for
good measure tested 5/10 tutorials as well for stability of the fix). Assuming
that it was the same issue you also faced as I've understood please verify with
the trunk. Again, thank you for noticing these issues and reporting them back
to us ASAP.
Committed revision 1514952.
was (Author: samindaw):
Hi Shinyoung,
There was an issue in the simple foreach workflow as well. I fixed the problem
and tested both the simple/complex foreach example workflows provided (and for
good measure tested 5/10 tutorials as well for stability of the fix). Assuming
that it was the same issue you also faced as I've understood please verify with
the trunk. Again, thank you for noticing these issues and reporting them back
to us ASAP.
> Parameter mismatching when using ForEach
> -----------------------------------------
>
> Key: AIRAVATA-820
> URL: https://issues.apache.org/jira/browse/AIRAVATA-820
> Project: Airavata
> Issue Type: Bug
> Reporter: Shinyoung Ahn
>
> When an application have three parameters, fir and second parameter's type is
> String type and
> the third parameter is StringArray type.
> Third parameter is connected to ForEach.
> When I execute the applications
> Airavat show unexpected behavior like below. 'Invoking service' do not use
> right value that I expected…
> I expect the input parameters’ values of bwa_aln_fwd_p_invoke are same with
> the parameter of 'WorkflowInvoked'.
> The Notification Message as follows
> -----------------------------------------------------------------------------------------------------------------
> Status'workflowInvoked'
> <ns:workflowInvoked infoModelVersion="2.6"
> xmlns:ns="http://airavata.apache.org/schemas/wft/2011/08";>
> <ns:notificationSource
> ns:serviceID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8"
> ns:experimentID="Workflow1_b8721d2f-d131-4ec3-bbb3-6fe12f528ed8" />
> <ns:timestamp>2013-04-11T09:15:41.988+09:00</ns:timestamp>
> <ns:description>thread=4, refIndexFile=/home/team/genome/bwaindex/chr22.fa,
> Input=/home/team/genome/Demo/sample_1.fq.00,/home/team/genome/Demo/sample_1.fq.01,
>
> Input=/home/team/genome/Demo/sample_1.fq.00,/home/team/genome/Demo/sample_1.fq.01</ns:description>
> <ns:annotation />
> <ns:initiator ns:serviceID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8"
> />
> </ns:workflowInvoked>
> -------------------------------------------------------------------------------------------------------------------
> Status: invokingService
> <ns:invokingService infoModelVersion="2.6"
> xmlns:ns="http://airavata.apache.org/schemas/wft/2011/08";>
> <ns:notificationSource
> ns:serviceID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8"
> ns:experimentID="Workflow1_b8721d2f-d131-4ec3-bbb3-6fe12f528ed8" />
> <ns:timestamp>2013-04-11T09:15:42.240+09:00</ns:timestamp>
> <ns:description>thread=/home/team/genome/Demo/sample_1.fq.00,
> refIndexFile=/home/team/genome/Demo/sample_1.fq.00,
> bwdFqFile=/home/team/genome/Demo/sample_1.fq.00</ns:description>
> <ns:annotation />
> <ns:request>
> <ns:body>
> <n1:invoke_InputParams
>
> xmlns:n1="http://airavata.apache.org/schemas/gfac/2012/12/bwa_aln_bwd/xsd";>
> <thread>/home/team/genome/Demo/sample_1.fq.00</thread>
> <refIndexFile>/home/team/genome/Demo/sample_1.fq.00</refIndexFile>
> <bwdFqFile>/home/team/genome/Demo/sample_1.fq.00</bwdFqFile>
> </n1:invoke_InputParams>
> </ns:body>
> </ns:request>
> <ns:receiver ns:serviceID="bwa_aln_bwd_invoke"
> ns:workflowID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8"
> ns:workflowTimestep="0" ns:workflowNodeID="bwa_aln_bwd_invoke" />
> </ns:invokingService>
> -------------------------------------------------------------------------------------------------------------------------
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