I get a different error now: java-client-samples$ mvn clean install -U -DskipTests=true -f pom.xml [INFO] Scanning for projects... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Airavata Client Samples 0.14-SNAPSHOT [INFO] ------------------------------------------------------------------------ Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-data-models/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-api/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-model-utils/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-common-utils/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/commons/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-api/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-api/0.14-SNAPSHOT/airavata-client-api-0.14-SNAPSHOT.pom [WARNING] The POM for org.apache.airavata:airavata-client-api:jar:0.14-SNAPSHOT is missing, no dependency information available Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-gfac-schema-utils/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-jpa-registry/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/registry/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-registry-api/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-workflow-execution-context/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-credential-store/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-registry-cpi/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-api-stubs/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-configuration/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-configuration/0.14-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-api/0.14-SNAPSHOT/airavata-client-api-0.14-SNAPSHOT.jar [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6.780s [INFO] Finished at: Wed Jul 30 13:43:44 PDT 2014 [INFO] Final Memory: 8M/148M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal on project airavata-client-samples: Could not resolve dependencies for project org.apache.airavata:airavata-client-samples:jar:0.14-SNAPSHOT: Could not find artifact org.apache.airavata:airavata-client-api:jar:0.14-SNAPSHOT in apache.snapshots (http://repository.apache.org/snapshots) -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
On Wed, Jul 30, 2014 at 04:20:01PM -0400, Marlon Pierce wrote: > Hi Kenneth-- > > You should first build the entire Airavata project (mvn clean install at > the top level). This should fix the missing dependency problems you see > below. You can then do the java-client-samples only build as often as > you want from there. > > I just verified this, but let us know if you have problems. The build > took ~6 minutes on my laptop over wireless, but your first build may > take a little longer as you'll need additional jars. > > Marlon > > On 7/30/14, 4:05 PM, K Yoshimoto wrote: > >I wanted to play a bit more with the existing java client examples, > >in parallel with the new ones that are being written. I tried > >building them but got an error about missing files. > >This was run from airavata-api/airavata-client-sdks/java-client-samples. > > > > > >mvn clean install -DskipTests=true -f pom.xml[INFO] Scanning for > >projects... > >[INFO] > >------------------------------------------------------------------------ > >[INFO] Building Airavata Client Samples > >[INFO] task-segment: [clean, install] > >[INFO] > >------------------------------------------------------------------------ > >[INFO] [clean:clean {execution: default-clean}] > >[debug] execute contextualize > >[INFO] [resources:copy-resources {execution: copy-resources}] > >[INFO] Using 'UTF-8' encoding to copy filtered resources. > >[INFO] skip non existing resourceDirectory > >/media/785F-C62B/scigap/phpclientsamples/airavata/airavata-api/airavata-client-sdks/java-client-samples/src/main/assembly/dist > >[INFO] [remote-resources:process {execution: default}] > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-data-models/0.14-SNAPSHOT/airavata-data-models-0.14-SNAPSHOT.pom > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-data-models:pom:0.14-SNAPSHOT' in repository > >apache.snapshots (http://repository.apache.org/snapshots) > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-model-utils/0.14-SNAPSHOT/airavata-model-utils-0.14-SNAPSHOT.pom > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-model-utils:pom:0.14-SNAPSHOT' in repository > >apache.snapshots (http://repository.apache.org/snapshots) > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-common-utils/0.14-SNAPSHOT/airavata-common-utils-0.14-SNAPSHOT.pom > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-common-utils:pom:0.14-SNAPSHOT' in > >repository apache.snapshots (http://repository.apache.org/snapshots) > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-api/0.14-SNAPSHOT/airavata-client-api-0.14-SNAPSHOT.pom > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-client-api:pom:0.14-SNAPSHOT' in repository > >apache.snapshots (http://repository.apache.org/snapshots) > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-gfac-schema-utils/0.14-SNAPSHOT/airavata-gfac-schema-utils-0.14-SNAPSHOT.pom > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-gfac-schema-utils:pom:0.14-SNAPSHOT' in > >repository apache.snapshots (http://repository.apache.org/snapshots) > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-jpa-registry/0.14-SNAPSHOT/airavata-jpa-registry-0.14-SNAPSHOT.pom > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-jpa-registry:pom:0.14-SNAPSHOT' in > >repository apache.snapshots (http://repository.apache.org/snapshots) > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-api-stubs/0.14-SNAPSHOT/airavata-api-stubs-0.14-SNAPSHOT.pom > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-api-stubs:pom:0.14-SNAPSHOT' in repository > >apache.snapshots (http://repository.apache.org/snapshots) > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-configuration/0.14-SNAPSHOT/airavata-client-configuration-0.14-SNAPSHOT.pom > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-client-configuration:pom:0.14-SNAPSHOT' in > >repository apache.snapshots (http://repository.apache.org/snapshots) > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-data-models/0.14-SNAPSHOT/airavata-data-models-0.14-SNAPSHOT.jar > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-data-models:jar:0.14-SNAPSHOT' in repository > >apache.snapshots (http://repository.apache.org/snapshots) > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-model-utils/0.14-SNAPSHOT/airavata-model-utils-0.14-SNAPSHOT.jar > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-model-utils:jar:0.14-SNAPSHOT' in repository > >apache.snapshots (http://repository.apache.org/snapshots) > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-common-utils/0.14-SNAPSHOT/airavata-common-utils-0.14-SNAPSHOT.jar > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-common-utils:jar:0.14-SNAPSHOT' in > >repository apache.snapshots (http://repository.apache.org/snapshots) > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-api/0.14-SNAPSHOT/airavata-client-api-0.14-SNAPSHOT.jar > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-client-api:jar:0.14-SNAPSHOT' in repository > >apache.snapshots (http://repository.apache.org/snapshots) > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-gfac-schema-utils/0.14-SNAPSHOT/airavata-gfac-schema-utils-0.14-SNAPSHOT.jar > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-gfac-schema-utils:jar:0.14-SNAPSHOT' in > >repository apache.snapshots (http://repository.apache.org/snapshots) > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-jpa-registry/0.14-SNAPSHOT/airavata-jpa-registry-0.14-SNAPSHOT.jar > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-jpa-registry:jar:0.14-SNAPSHOT' in > >repository apache.snapshots (http://repository.apache.org/snapshots) > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-api-stubs/0.14-SNAPSHOT/airavata-api-stubs-0.14-SNAPSHOT.jar > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-api-stubs:jar:0.14-SNAPSHOT' in repository > >apache.snapshots (http://repository.apache.org/snapshots) > >Downloading: > >http://repository.apache.org/snapshots/org/apache/airavata/airavata-client-configuration/0.14-SNAPSHOT/airavata-client-configuration-0.14-SNAPSHOT.jar > >[INFO] Unable to find resource > >'org.apache.airavata:airavata-client-configuration:jar:0.14-SNAPSHOT' in > >repository apache.snapshots (http://repository.apache.org/snapshots) > >[INFO] > >------------------------------------------------------------------------ > >[ERROR] BUILD ERROR > >[INFO] > >------------------------------------------------------------------------ > >[INFO] Failed to resolve dependencies for one or more projects in the > >reactor. Reason: Missing: > >---------- > >1) org.apache.airavata:airavata-data-models:jar:0.14-SNAPSHOT > > > >On Thu, Jul 24, 2014 at 04:19:36PM -0400, Lahiru Gunathilake wrote: > >>This is very true, I can create bunch of features/todos in airavata based > >>on this email thread. > >> > >>And I will do that and follow up :-) > >> > >> > >>On Thu, Jul 24, 2014 at 4:15 PM, Miller, Mark <mmil...@sdsc.edu> wrote: > >> > >>>I wanted to chime in and say, that's really the point of Kenneth's > >>>activity. > >>>We do not expect you all to be able to provide everything that a new > >>>developer will need to know. I find it super-efficient to make a credible > >>>first pass, and assume there will be holes. He is a test case to drive > >>>requirements and help create documentation for all who follow.... > >>> > >>>Mark > >>> > >>>-----Original Message----- > >>>From: Marlon Pierce [mailto:marpi...@iu.edu] > >>>Sent: Thursday, July 24, 2014 12:50 PM > >>>To: Yoshimoto, Kenneth; dev@airavata.apache.org > >>>Cc: d...@scigap.org > >>>Subject: Re: [SciGaP-Dev] CIPRES-Airavata integration proposal]] > >>> > >>>It's in airavata-api/thrift-interface-descriptions/ in your checkout, and > >>>in > >>>https://github.com/apache/airavata/tree/master/airavata-api/thrift-interface-descriptions > >>>on github. > >>> > >>>"You should dig around in the API to solve your problems" is not my > >>>preferred response. We just don't have all the examples we need. Your > >>>feedback and contributions of use cases and scripts will help us pull > >>>these > >>>together. > >>> > >>>Marlon > >>> > >>>On 7/24/14, 3:44 PM, K Yoshimoto wrote: > >>>>Thanks, Marlon. Where do I find experimentModel.thrift? > >>>> > >>>>On Thu, Jul 24, 2014 at 03:36:49PM -0400, Marlon Pierce wrote: > >>>>>Note in general that the PHP scripts are just illustrative and don't > >>>>>show everything. However, you do have access to everything in the > >>>>>API in these scripts if you modify them. > >>>>> > >>>>>Maybe the best way to see what can be done is to look at the Thrift > >>>>>models. In this case, the experimentModel.thrift has the complete > >>>>>description. These are all programmatically available in PHP. > >>>>> > >>>>> > >>>>>Marlon > >>>>> > >>>>> > >>>>>On 7/24/14, 3:31 PM, Singh, Raminder jeet wrote: > >>>>>>Kenneth, > >>>>>> > >>>>>>It looks like your application id is NULL. Can you please look into > >>>>>>your sample experiment create/launch code? Ideally experiment > >>>>>>validator should though such exception to the user if application id > >>>>>>is not set. I will look into the validation code. I am working to > >>>>>>get experiment errors using a function call. > >>>>>> > >>>>>>>php getExperiment.php pwdtest_e08d60fb-62e9-4d54-bfe4-8688d894585d > >>>>>>object(Airavata\Model\Workspace\Experiment\Experiment)#6 (18) { > >>>>>> ["experimentID"]=> > >>>>>> string(44) "pwdtest_e08d60fb-62e9-4d54-bfe4-8688d894585d" > >>>>>> ["projectID"]=> > >>>>>> string(48) "kennethtest_deebd5c1-2b77-481b-a01c-9c8213cdc560" > >>>>>> ["creationTime"]=> > >>>>>> int(1406155998504) > >>>>>> ["userName"]=> > >>>>>> string(7) "kenneth" > >>>>>> ["name"]=> > >>>>>> string(7) "pwdtest" > >>>>>> ["description"]=> > >>>>>> NULL > >>>>>> ["applicationId"]=> > >>>>>> NULL > >>>>>> ["applicationVersion"]=> > >>>>>> NULL > >>>>>> > >>>>>>Thanks > >>>>>>Raminder > >>>>>> > >>>>>> > >>>>>>On Jul 24, 2014, at 2:36 PM, K Yoshimoto <kenn...@sdsc.edu> wrote: > >>>>>> > >>>>>>>I took a look through: > >>>>>>>RegisterSampleApplications.java > >>>>>>>RegisterSampleApplicationsUtils.java > >>>>>>> > >>>>>>>I see the examples for setting up the various apps and compute hosts. > >>>>>>> > >>>>>>>some questions: > >>>>>>>- is there an equivalent php sample set for doing this? > >>>>>>>- what's the easiest way to build the java samples, if those have > >>>>>>> more example coverage than the php samples? > >>>>>>>- is there a document for supported strings for > >>>resourceJobManagerType? > >>>>>>>On Wed, Jul 23, 2014 at 10:45:12PM -0400, Lahiru Gunathilake wrote: > >>>>>>>>Did you have a look in to RegisterSampleApplications.java class ? > >>>>>>>> > >>>>>>>>registerXSEDEHosts method is registering bigred2.uits.iu.edu and > >>>>>>>>its an ssh host, but in your case your job manager type will be > >>>>>>>>FORK. > >>>>>>>> > >>>>>>>>If you can connect to this head node using ssh protocol airavata > >>>>>>>>should work if its gsissh then we do not support it at this point. > >>>>>>>>Configure your ssh key configurations in > >>>>>>>>airavata-server.properties (either username password or keys) or > >>>>>>>>You can store these information to the credential store and parse > >>>>>>>>the tokenId generated during credential storing and use that token > >>>>>>>>along the request. > >>>>>>>> > >>>>>>>>################# ---------- For ssh key pair authentication > >>>>>>>>------------------- ################ #public.ssh.key=/path to > >>>>>>>>public key for ssh #ssh.username=username for ssh connection > >>>>>>>>#private.ssh.key=/path to private key file for ssh > >>>>>>>>#ssh.keypass=passphrase for the private key > >>>>>>>> > >>>>>>>> > >>>>>>>>################# ---------- For ssh key pair authentication > >>>>>>>>------------------- ################ #ssh.username=username for > >>>>>>>>ssh connection #ssh.password=Password for ssh connection > >>>>>>>> > >>>>>>>>I will try to do the same thing in stampede and get back to you. > >>>>>>>> > >>>>>>>>Regards > >>>>>>>>Lahiru > >>>>>>>> > >>>>>>>> > >>>>>>>> > >>>>>>>> > >>>>>>>>On Jul 23, 2014, at 7:05 PM, K Yoshimoto wrote: > >>>>>>>> > >>>>>>>>>Great info! How do I register a host as a non-hpc resource? > >>>>>>>>>I didn't see an obvious variable name in the > >>>>>>>>>registerComputeResource.php example script. > >>>>>>>>> > >>>>>>>>>On Wed, Jul 23, 2014 at 01:56:51PM -0400, Lahiru Gunathilake wrote: > >>>>>>>>>>On Jul 23, 2014, at 1:49 PM, K Yoshimoto wrote: > >>>>>>>>>> > >>>>>>>>>>>Hi, just following up on this query. Could someone send a > >>>>>>>>>>>step-by-step on registering a new app and using it in an > >>>>>>>>>>>experiment? > >>>>>>>>>>Look at this class RegisterSampleApplications, Suresh is working > >>>>>>>>>>on the experiment creation code and soon it will be committed. > >>>>>>>>>>>Is there > >>>>>>>>>>>a way to specify that an app runs on the login node rather than > >>>>>>>>>>>in batch? > >>>>>>>>>>If you register the same host as a non-hpc resource then it will > >>>>>>>>>>be like a norma exec otherwise we create a PBS script and submit > >>>>>>>>>>the job to the job-manager. > >>>>>>>>>>>Also, could someone point me to the Take 1 integration code > >>>>>>>>>>>that Saminda developed? > >>>>>>>>>>No idea about this. > >>>>>>>>>>>Kenneth > >>>>>>>>>>> > >>>>>>>>>>>On Fri, Jul 18, 2014 at 01:28:00PM -0700, K Yoshimoto wrote: > >>>>>>>>>>>>I can registerApplicationModule.php now. > >>>>>>>>>>>>registerApplicationInterface.php fails, even when I comment > >>>>>>>>>>>>out the disable(). What is the proper way to put in a new > >>>>>>>>>>>>Application? Is there a way to specify an application that > >>>>>>>>>>>>runs directly on the submit node, rather than through a batch > >>>>>>>>>>>>job? > >>>>>>>>>>>> > >>>>>>>>>>>>On Fri, Jul 18, 2014 at 12:24:08PM -0400, Lahiru Gunathilake > >>>wrote: > >>>>>>>>>>>>>My plan is to use jobname to filter monitoring with an OR > >>>condition. > >>>>>>>>>>>>>Meantime I can experiment the two phase way of job submission > >>>>>>>>>>>>>where I can set the job Id. > >>>>>>>>>>>>> > >>>>>>>>>>>>> > >>>>>>>>>>>>> > >>>>>>>>>>>>> > >>>>>>>>>>>>>On Fri, Jul 18, 2014 at 12:12 PM, Lahiru Gunathilake > >>>>>>>>>>>>><glah...@gmail.com> > >>>>>>>>>>>>>wrote: > >>>>>>>>>>>>> > >>>>>>>>>>>>>>Verifying valid submit host (login4)...OK > >>>>>>>>>>>>>>>>>--> Verifying valid jobname...OK Enforcing max jobs per > >>>>>>>>>>>>>>>>>--> user...OK Verifying availability of your home dir > >>>>>>>>>>>>>>>>>(/home1/01437/ogce)...OK > >>>>>>>>>>>>>>>>>--> Verifying availability of your work dir > >>>>>>>>>>>>>>>>>(/work/01437/ogce)...OK > >>>>>>>>>>>>>>>>>--> Verifying availability of your scratch dir > >>>>>>>>>>>>>>>>>(/scratch/01437/ogce)...OK > >>>>>>>>>>>>>>>>>--> Verifying valid ssh keys...OK Verifying access to > >>>>>>>>>>>>>>>>>--> desired queue (normal)...OK Verifying job request is > >>>>>>>>>>>>>>>>>--> within current queue limits...OK Checking available > >>>>>>>>>>>>>>>>>--> allocation (TG-STA110014S)... > >>>>>>>>>>>>>>Reason for the in interesting state is above output doesn't > >>>>>>>>>>>>>>have the job Id returned. This is a known issue. We will > >>>>>>>>>>>>>>provide a fix to this issue very soon. > >>>>>>>>>>>>>> > >>>>>>>>>>>>>> > >>>>>>>>>>>>>> > >>>>>>>>>>>>>>On Fri, Jul 18, 2014 at 12:07 PM, K Yoshimoto > >>>>>>>>>>>>>><kenn...@sdsc.edu> > >>>>>>>>>>>>>>wrote: > >>>>>>>>>>>>>> > >>>>>>>>>>>>>>>Sending to d...@airavata.org also. > >>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>On 7/16/14, 4:22 PM, K Yoshimoto wrote: > >>>>>>>>>>>>>>>>>I got the hello, world experiment to run! I also modified > >>>>>>>>>>>>>>>>>createExperiment.php to play with different inputs. That > >>>>>>>>>>>>>>>>>worked fine. > >>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>I was trying to create a new application with > >>>>>>>>>>>>>>>>>registerApplicationModule.php but got an error: > >>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>php registerApplicationModule.php pwd 1.0 'print working > >>>>>>>>>>>>>>>>>directory' > >>>>>>>>>>>>>>>>>Airavata System Exception: Error while adding application > >>>>>>>>>>>>>>>>>module. > >>>>>>>>>>>>>>>>>More info : > >>>>>>>>>>>>>>>>>org.airavata.appcatalog.cpi.AppCatalogException: > >>>>>>>>>>>>>>>>><openjpa-2.2.0-r422266:1244990 fatal general error> > >>>>>>>>>>>>>>>>>org.apache.openjpa.persistence.PersistenceException: The > >>>>>>>>>>>>>>>>>last packet successfully received from the server was > >>>>>>>>>>>>>>>>>197,463,645 milliseconds ago. The last packet sent > >>>>>>>>>>>>>>>>>successfully to the server was > >>>>>>>>>>>>>>>>>197,463,646 > >>>>>>>>>>>>>>>>>milliseconds ago. is longer than the server configured > >>>>>>>>>>>>>>>>>value of 'wait_timeout'. You should consider either > >>>>>>>>>>>>>>>>>expiring and/or testing connection validity before use in > >>>>>>>>>>>>>>>>>your application, increasing the server configured values > >>>>>>>>>>>>>>>>>for client timeouts, or using the Connector/J connection > >>>>>>>>>>>>>>>>>property 'autoReconnect=true' to avoid this problem. > >>>>>>>>>>>>>>>>>FailedObject: pwd_64d83246-dd86-40ab-9890-5c0492766dcc > >>>>>>>>>>>>>>>>>[org.apache.openjpa.util.StringId] [java.lang.String] > >>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>On Thu, Jul 10, 2014 at 02:55:21PM -0700, K Yoshimoto > >>>>>>>>>>>>>>>>>wrote: > >>>>>>>>>>>>>>>>>>Okay, now I'm getting a really interesting job status: > >>>>>>>>>>>>>>>>>>"UNKNOWN". > >>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>john@anya > >>>>>>>>>>>>>>>:/media/mdhpss/scigap/phpclientsamples/airavata/airavata-ap > >>>>>>>>>>>>>>>i/airavata-client-sdks/airavata-php-sdk/src/main/resources/ > >>>>>>>>>>>>>>>php-cli-samples$ > >>>>>>>>>>>>>>>>>>php getExperimentStatus.php > >>>>>>>>>>>>>>>>>>kennethexp4_5855ec6f-651b-4e01-83d0-67fb5b852eb1 > >>>>>>>>>>>>>>>>>>experiment status = LAUNCHED <br> john@anya > >>>>>>>>>>>>>>>:/media/mdhpss/scigap/phpclientsamples/airavata/airavata-ap > >>>>>>>>>>>>>>>i/airavata-client-sdks/airavata-php-sdk/src/main/resources/ > >>>>>>>>>>>>>>>php-cli-samples$ > >>>>>>>>>>>>>>>>>>php getExperimentStatus.php > >>>>>>>>>>>>>>>>>>kennethexp4_5855ec6f-651b-4e01-83d0-67fb5b852eb1 > >>>>>>>>>>>>>>>>>>experiment status = LAUNCHED <br> john@anya > >>>>>>>>>>>>>>>:/media/mdhpss/scigap/phpclientsamples/airavata/airavata-ap > >>>>>>>>>>>>>>>i/airavata-client-sdks/airavata-php-sdk/src/main/resources/ > >>>>>>>>>>>>>>>php-cli-samples$ > >>>>>>>>>>>>>>>>>>php getExperimentStatus.php > >>>>>>>>>>>>>>>>>>kennethexp4_5855ec6f-651b-4e01-83d0-67fb5b852eb1 > >>>>>>>>>>>>>>>>>>experiment status = UNKNOWN <br> john@anya > >>>>>>>>>>>>>>>:/media/mdhpss/scigap/phpclientsamples/airavata/airavata-ap > >>>>>>>>>>>>>>>i/airavata-client-sdks/airavata-php-sdk/src/main/resources/ > >>>>>>>>>>>>>>>php-cli-samples$ > >>>>>>>>>>>>>>>>>>php getExperimentStatus.php > >>>>>>>>>>>>>>>>>>kennethexp4_5855ec6f-651b-4e01-83d0-67fb5b852eb1 > >>>>>>>>>>>>>>>>>>experiment status = UNKNOWN <br> john@anya > >>>>>>>>>>>>>>>:/media/mdhpss/scigap/phpclientsamples/airavata/airavata-ap > >>>>>>>>>>>>>>>i/airavata-client-sdks/airavata-php-sdk/src/main/resources/ > >>>>>>>>>>>>>>>php-cli-samples$ > >>>>>>>>>>>>>>>>>>On Thu, Jul 10, 2014 at 05:37:12PM -0400, Raminderjeet > >>>>>>>>>>>>>>>>>>Singh > >>>>>>>>>>>>>>>>>>wrote: > >>>>>>>>>>>>>>>>>>>I reported it already to TACC and working with them to > >>>>>>>>>>>>>>>>>>>get it resolved. > >>>>>>>>>>>>>>>>>>>This is an occasional issue. If you submit new job it > >>>>>>>>>>>>>>>>>>>will work. > >>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>Thanks > >>>>>>>>>>>>>>>>>>>Raminder > >>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>On Thu, Jul 10, 2014 at 5:15 PM, K Yoshimoto > >>>>>>>>>>>>>>>>>>><kenn...@sdsc.edu> > >>>>>>>>>>>>>>>wrote: > >>>>>>>>>>>>>>>>>>>>I'm getting FAILED with stampede. Maybe allocation > >>>>>>>>>>>>>>>>>>>>check fails? > >>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>php getExperiment.php > >>>>>>>>>>>>>>>>>>>>kennethexp4_9acfe7f5-70ad-423e-9eee-602c09bc8ae4 > >>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>... > >>>>>>>>>>>>>>>>>>>> [12]=> > >>>>>>>>>>>>>>>>>>>>object(Airavata\Model\Workspace\Experiment\ErrorDetail > >>>>>>>>>>>>>>>>>>>>s)#74 > >>>>>>>>>>>>>>>>>>>>(9) { > >>>>>>>>>>>>>>>>>>>> ["errorID"]=> > >>>>>>>>>>>>>>>>>>>> string(4) "1077" > >>>>>>>>>>>>>>>>>>>> ["creationTime"]=> > >>>>>>>>>>>>>>>>>>>> int(1405026660866) > >>>>>>>>>>>>>>>>>>>> ["actualErrorMessage"]=> > >>>>>>>>>>>>>>>>>>>> string(792) "Error submitting the job to host > >>>>>>>>>>>>>>>>>>>>stampede.tacc.xsede.org message: > >>>>>>>>>>>>>>>>>>>> > >>>----------------------------------------------------------------- > >>>>>>>>>>>>>>>>>>>> Welcome to the Stampede Supercomputer > >>>>>>>>>>>>>>>>>>>>------------------------------------------------------ > >>>>>>>>>>>>>>>>>>>>----------- > >>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>--> Verifying valid submit host (login4)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying valid jobname...OK Enforcing max jobs > >>>>>>>>>>>>>>>>>>>>--> per user...OK Verifying availability of your home > >>>>>>>>>>>>>>>>>>>>--> dir > >>>>>>>>>>>>>>>>>>>>(/home1/01437/ogce)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying availability of your work dir > >>>>>>>>>>>>>>>>>>>>(/work/01437/ogce)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying availability of your scratch dir > >>>>>>>>>>>>>>>>>>>>(/scratch/01437/ogce)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying valid ssh keys...OK Verifying access to > >>>>>>>>>>>>>>>>>>>>--> desired queue (normal)...OK Verifying job request > >>>>>>>>>>>>>>>>>>>>--> is within current queue limits...OK Checking > >>>>>>>>>>>>>>>>>>>>--> available allocation (TG-STA110014S)..." > >>>>>>>>>>>>>>>>>>>> ["userFriendlyMessage"]=> > >>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>> ["errorCategory"]=> > >>>>>>>>>>>>>>>>>>>> int(6) > >>>>>>>>>>>>>>>>>>>> ["transientOrPersistent"]=> > >>>>>>>>>>>>>>>>>>>> bool(false) > >>>>>>>>>>>>>>>>>>>> ["correctiveAction"]=> > >>>>>>>>>>>>>>>>>>>> int(1) > >>>>>>>>>>>>>>>>>>>> ["actionableGroup"]=> > >>>>>>>>>>>>>>>>>>>> int(2) > >>>>>>>>>>>>>>>>>>>> ["rootCauseErrorIdList"]=> > >>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>> [13]=> > >>>>>>>>>>>>>>>>>>>>object(Airavata\Model\Workspace\Experiment\ErrorDetail > >>>>>>>>>>>>>>>>>>>>s)#75 > >>>>>>>>>>>>>>>>>>>>(9) { > >>>>>>>>>>>>>>>>>>>> ["errorID"]=> > >>>>>>>>>>>>>>>>>>>> string(4) "1078" > >>>>>>>>>>>>>>>>>>>> ["creationTime"]=> > >>>>>>>>>>>>>>>>>>>> int(1405026660866) > >>>>>>>>>>>>>>>>>>>> ["actualErrorMessage"]=> > >>>>>>>>>>>>>>>>>>>> string(792) "Error submitting the job to host > >>>>>>>>>>>>>>>>>>>>stampede.tacc.xsede.org message: > >>>>>>>>>>>>>>>>>>>> > >>>----------------------------------------------------------------- > >>>>>>>>>>>>>>>>>>>> Welcome to the Stampede Supercomputer > >>>>>>>>>>>>>>>>>>>>------------------------------------------------------ > >>>>>>>>>>>>>>>>>>>>----------- > >>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>--> Verifying valid submit host (login4)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying valid jobname...OK Enforcing max jobs > >>>>>>>>>>>>>>>>>>>>--> per user...OK Verifying availability of your home > >>>>>>>>>>>>>>>>>>>>--> dir > >>>>>>>>>>>>>>>>>>>>(/home1/01437/ogce)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying availability of your work dir > >>>>>>>>>>>>>>>>>>>>(/work/01437/ogce)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying availability of your scratch dir > >>>>>>>>>>>>>>>>>>>>(/scratch/01437/ogce)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying valid ssh keys...OK Verifying access to > >>>>>>>>>>>>>>>>>>>>--> desired queue (normal)...OK Verifying job request > >>>>>>>>>>>>>>>>>>>>--> is within current queue limits...OK Checking > >>>>>>>>>>>>>>>>>>>>--> available allocation (TG-STA110014S)..." > >>>>>>>>>>>>>>>>>>>> ["userFriendlyMessage"]=> > >>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>> ["errorCategory"]=> > >>>>>>>>>>>>>>>>>>>> int(6) > >>>>>>>>>>>>>>>>>>>> ["transientOrPersistent"]=> > >>>>>>>>>>>>>>>>>>>> bool(false) > >>>>>>>>>>>>>>>>>>>> ["correctiveAction"]=> > >>>>>>>>>>>>>>>>>>>> int(1) > >>>>>>>>>>>>>>>>>>>> ["actionableGroup"]=> > >>>>>>>>>>>>>>>>>>>> int(2) > >>>>>>>>>>>>>>>>>>>> ["rootCauseErrorIdList"]=> > >>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>> [14]=> > >>>>>>>>>>>>>>>>>>>>object(Airavata\Model\Workspace\Experiment\ErrorDetail > >>>>>>>>>>>>>>>>>>>>s)#76 > >>>>>>>>>>>>>>>>>>>>(9) { > >>>>>>>>>>>>>>>>>>>> ["errorID"]=> > >>>>>>>>>>>>>>>>>>>> string(4) "1079" > >>>>>>>>>>>>>>>>>>>> ["creationTime"]=> > >>>>>>>>>>>>>>>>>>>> int(1405026660866) > >>>>>>>>>>>>>>>>>>>> ["actualErrorMessage"]=> > >>>>>>>>>>>>>>>>>>>> string(792) "Error submitting the job to host > >>>>>>>>>>>>>>>>>>>>stampede.tacc.xsede.org message: > >>>>>>>>>>>>>>>>>>>> > >>>----------------------------------------------------------------- > >>>>>>>>>>>>>>>>>>>> Welcome to the Stampede Supercomputer > >>>>>>>>>>>>>>>>>>>>------------------------------------------------------ > >>>>>>>>>>>>>>>>>>>>----------- > >>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>--> Verifying valid submit host (login4)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying valid jobname...OK Enforcing max jobs > >>>>>>>>>>>>>>>>>>>>--> per user...OK Verifying availability of your home > >>>>>>>>>>>>>>>>>>>>--> dir > >>>>>>>>>>>>>>>>>>>>(/home1/01437/ogce)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying availability of your work dir > >>>>>>>>>>>>>>>>>>>>(/work/01437/ogce)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying availability of your scratch dir > >>>>>>>>>>>>>>>>>>>>(/scratch/01437/ogce)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying valid ssh keys...OK Verifying access to > >>>>>>>>>>>>>>>>>>>>--> desired queue (normal)...OK Verifying job request > >>>>>>>>>>>>>>>>>>>>--> is within current queue limits...OK Checking > >>>>>>>>>>>>>>>>>>>>--> available allocation (TG-STA110014S)..." > >>>>>>>>>>>>>>>>>>>> ["userFriendlyMessage"]=> > >>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>> ["errorCategory"]=> > >>>>>>>>>>>>>>>>>>>> int(6) > >>>>>>>>>>>>>>>>>>>> ["transientOrPersistent"]=> > >>>>>>>>>>>>>>>>>>>> bool(false) > >>>>>>>>>>>>>>>>>>>> ["correctiveAction"]=> > >>>>>>>>>>>>>>>>>>>> int(1) > >>>>>>>>>>>>>>>>>>>> ["actionableGroup"]=> > >>>>>>>>>>>>>>>>>>>> int(2) > >>>>>>>>>>>>>>>>>>>> ["rootCauseErrorIdList"]=> > >>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>> [15]=> > >>>>>>>>>>>>>>>>>>>>object(Airavata\Model\Workspace\Experiment\ErrorDetail > >>>>>>>>>>>>>>>>>>>>s)#77 > >>>>>>>>>>>>>>>>>>>>(9) { > >>>>>>>>>>>>>>>>>>>> ["errorID"]=> > >>>>>>>>>>>>>>>>>>>> string(4) "1080" > >>>>>>>>>>>>>>>>>>>> ["creationTime"]=> > >>>>>>>>>>>>>>>>>>>> int(1405026660866) > >>>>>>>>>>>>>>>>>>>> ["actualErrorMessage"]=> > >>>>>>>>>>>>>>>>>>>> string(792) "Error submitting the job to host > >>>>>>>>>>>>>>>>>>>>stampede.tacc.xsede.org message: > >>>>>>>>>>>>>>>>>>>> > >>>----------------------------------------------------------------- > >>>>>>>>>>>>>>>>>>>> Welcome to the Stampede Supercomputer > >>>>>>>>>>>>>>>>>>>>------------------------------------------------------ > >>>>>>>>>>>>>>>>>>>>----------- > >>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>--> Verifying valid submit host (login4)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying valid jobname...OK Enforcing max jobs > >>>>>>>>>>>>>>>>>>>>--> per user...OK Verifying availability of your home > >>>>>>>>>>>>>>>>>>>>--> dir > >>>>>>>>>>>>>>>>>>>>(/home1/01437/ogce)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying availability of your work dir > >>>>>>>>>>>>>>>>>>>>(/work/01437/ogce)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying availability of your scratch dir > >>>>>>>>>>>>>>>>>>>>(/scratch/01437/ogce)...OK > >>>>>>>>>>>>>>>>>>>>--> Verifying valid ssh keys...OK Verifying access to > >>>>>>>>>>>>>>>>>>>>--> desired queue (normal)...OK Verifying job request > >>>>>>>>>>>>>>>>>>>>--> is within current queue limits...OK Checking > >>>>>>>>>>>>>>>>>>>>--> available allocation (TG-STA110014S)..." > >>>>>>>>>>>>>>>>>>>> ["userFriendlyMessage"]=> > >>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>> ["errorCategory"]=> > >>>>>>>>>>>>>>>>>>>> int(6) > >>>>>>>>>>>>>>>>>>>> ["transientOrPersistent"]=> > >>>>>>>>>>>>>>>>>>>> bool(false) > >>>>>>>>>>>>>>>>>>>> ["correctiveAction"]=> > >>>>>>>>>>>>>>>>>>>> int(1) > >>>>>>>>>>>>>>>>>>>> ["actionableGroup"]=> > >>>>>>>>>>>>>>>>>>>> int(2) > >>>>>>>>>>>>>>>>>>>> ["rootCauseErrorIdList"]=> > >>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>} > >>>>>>>>>>>>>>>>>>>>} > >>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>On Thu, Jul 10, 2014 at 08:53:06PM +0000, Singh, > >>>>>>>>>>>>>>>>>>>>Raminder jeet wrote: > >>>>>>>>>>>>>>>>>>>>>We setup a new database on Tuesday. Everything > >>>>>>>>>>>>>>>>>>>>>created after that should > >>>>>>>>>>>>>>>>>>>>exist. > >>>>>>>>>>>>>>>>>>>>>Thanks > >>>>>>>>>>>>>>>>>>>>>Raminder > >>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>On Jul 10, 2014, at 4:47 PM, K Yoshimoto > >>>>>>>>>>>>>>>>>>>>><kenn...@sdsc.edu> > >>>>>>>>>>>>>>>>>>>>>wrote: > >>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>Thanks, Raminder. Did the old experiment, project > >>>>>>>>>>>>>>>>>>>>>>and user get wiped out or should they still be > >>>>>>>>>>>>>>>>>>>>>>there? > >>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>On Thu, Jul 10, 2014 at 08:38:24PM +0000, Singh, > >>>>>>>>>>>>>>>>>>>>>>Raminder jeet > >>>>>>>>>>>>>>>>>>>>>>wrote: > >>>>>>>>>>>>>>>>>>>>>>>Hi Kenneth, > >>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>Create and launch should work now. I added default > >>>>>>>>>>>>>>>>>>>>>>>values for > >>>>>>>>>>>>>>>>>>>>applicationid and hostid in createExperiment for Echo > >>>>>>>>>>>>>>>>>>>>application on Stampede. I updated launchExperiment > >>>>>>>>>>>>>>>>>>>>with a valid airavata token for experiment to work > >>>>>>>>>>>>>>>>>>>>well. Please let me know if you face any other issue. > >>>>>>>>>>>>>>>>>>>>I am also in process of testing other scripts. > >>>>>>>>>>>>>>>>>>>>>>>Thanks > >>>>>>>>>>>>>>>>>>>>>>>Raminder > >>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>On Jul 10, 2014, at 4:04 PM, Marlon Pierce > >>>>>>>>>>>>>>>>>>>>>>><marpi...@iu.edu> > >>>>>>>>>>>>>>>>>>>>>>>wrote: > >>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>There is a bug in script (API changed). Raminder > >>>>>>>>>>>>>>>>>>>>>>>>is working to fix > >>>>>>>>>>>>>>>>>>>>it now. > >>>>>>>>>>>>>>>>>>>>>>>>Marlon > >>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>On 7/10/14, 3:57 PM, K Yoshimoto wrote: > >>>>>>>>>>>>>>>>>>>>>>>>>I launched another one, and it's still in LAUNCHED. > >>>>>>>>>>>>>>>>>>>>>>>>>Is there a way for the gateway developer to > >>>>>>>>>>>>>>>>>>>>>>>>>retrieve a job id? > >>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>john@anya > >>>>>>>>>>>>>>>:/media/mdhpss/scigap/phpclientsamples/airavata/airavata-ap > >>>>>>>>>>>>>>>i/airavata-client-sdks/airavata-php-sdk/src/main/resources/ > >>>>>>>>>>>>>>>php-cli-samples$ > >>>>>>>>>>>>>>>>>>>>php getExperimentStatus.php > >>>>>>>>>>>>>>>>>>>>kennethexp2_f161f3a5-04a8-4ee9-862c-918e383e852d > >>>>>>>>>>>>>>>>>>>>>>>>>experiment status = LAUNCHED <br> john@anya > >>>>>>>>>>>>>>>:/media/mdhpss/scigap/phpclientsamples/airavata/airavata-ap > >>>>>>>>>>>>>>>i/airavata-client-sdks/airavata-php-sdk/src/main/resources/ > >>>>>>>>>>>>>>>php-cli-samples$ > >>>>>>>>>>>>>>>>>>>>php getExperimentStatus.php > >>>>>>>>>>>>>>>>>>>>kennethexp2_f161f3a5-04a8-4ee9-862c-918e383e852d > >>>>>>>>>>>>>>>>>>>>>>>>>experiment status = LAUNCHED > >>>>>>>>>>>>>>>>>>>>>>>>><br> > >>>>>>>>>>>>>>>>>>>>>>>>>john@anya > >>>:/media/mdhpss/scigap/phpclientsamples/airavata/airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/php-cli-samples$ > >>>>>>>>>>>>>>>>>>>>php getExperiment.php > >>>>>>>>>>>>>>>>>>>>kennethexp2_f161f3a5-04a8-4ee9-862c-918e383e852d > >>>object(Airavata\Model\Workspace\Experiment\Experiment)#6 (18) { > >>>>>>>>>>>>>>>>>>>>>>>>>["experimentID"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>string(48) > >>>>>>>>>>>>>>>>>>>>>>>>>"kennethexp2_f161f3a5-04a8-4ee9-862c-918e383e852d" > >>>>>>>>>>>>>>>>>>>>>>>>>["projectID"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>string(48) > >>>>>>>>>>>>>>>>>>>>>>>>>"kennethtest_721c9e67-846d-4081-b1db-a573e198ec01" > >>>>>>>>>>>>>>>>>>>>>>>>>["creationTime"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>int(1405021121026) > >>>>>>>>>>>>>>>>>>>>>>>>>["userName"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>string(7) "kenneth" > >>>>>>>>>>>>>>>>>>>>>>>>>["name"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>string(11) "kennethexp2" > >>>>>>>>>>>>>>>>>>>>>>>>>["description"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>NULL > >>>>>>>>>>>>>>>>>>>>>>>>>["applicationId"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>string(11) "SimpleEcho2" > >>>>>>>>>>>>>>>>>>>>>>>>>["applicationVersion"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>NULL > >>>>>>>>>>>>>>>>>>>>>>>>>["workflowTemplateId"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>NULL > >>>>>>>>>>>>>>>>>>>>>>>>>["workflowTemplateVersion"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>NULL > >>>>>>>>>>>>>>>>>>>>>>>>>["userConfigurationData"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> > >>>object(Airavata\Model\Workspace\Experiment\UserConfigurationData)#7 > >>>>>>>>>>>>>>>(7) > >>>>>>>>>>>>>>>>>>>>{ > >>>>>>>>>>>>>>>>>>>>>>>>>["airavataAutoSchedule"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>bool(false) > >>>>>>>>>>>>>>>>>>>>>>>>>["overrideManualScheduledParams"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>bool(false) > >>>>>>>>>>>>>>>>>>>>>>>>>["shareExperimentPublicly"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>bool(false) > >>>>>>>>>>>>>>>>>>>>>>>>>["computationalResourceScheduling"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> > >>>object(Airavata\Model\Workspace\Experiment\ComputationalResourceScheduling)#8 > >>>>>>>>>>>>>>>>>>>>(9) { > >>>>>>>>>>>>>>>>>>>>>>>>>["resourceHostId"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(17) "trestles.sdsc.edu" > >>>>>>>>>>>>>>>>>>>>>>>>> ["totalCPUCount"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(1) > >>>>>>>>>>>>>>>>>>>>>>>>> ["nodeCount"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(1) > >>>>>>>>>>>>>>>>>>>>>>>>> ["numberOfThreads"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(0) > >>>>>>>>>>>>>>>>>>>>>>>>> ["queueName"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(6) "normal" > >>>>>>>>>>>>>>>>>>>>>>>>> ["wallTimeLimit"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(15) > >>>>>>>>>>>>>>>>>>>>>>>>> ["jobStartTime"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(566815272) > >>>>>>>>>>>>>>>>>>>>>>>>> ["totalPhysicalMemory"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(0) > >>>>>>>>>>>>>>>>>>>>>>>>> ["computationalProjectAccount"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>>>>>>>} > >>>>>>>>>>>>>>>>>>>>>>>>>["advanceInputDataHandling"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>NULL > >>>>>>>>>>>>>>>>>>>>>>>>>["advanceOutputDataHandling"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>NULL > >>>>>>>>>>>>>>>>>>>>>>>>>["qosParams"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>NULL > >>>>>>>>>>>>>>>>>>>>>>>>>} > >>>>>>>>>>>>>>>>>>>>>>>>>["workflowExecutionInstanceId"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>NULL > >>>>>>>>>>>>>>>>>>>>>>>>>["experimentInputs"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>array(1) { > >>>>>>>>>>>>>>>>>>>>>>>>>[0]=> > >>>>>>>>>>>>>>>>>>>>>>>>> > >>>object(Airavata\Model\Workspace\Experiment\DataObjectType)#9 (4) > >>>>>>>>>>>>>>>>>>>>{ > >>>>>>>>>>>>>>>>>>>>>>>>> ["key"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(10) "echo_input" > >>>>>>>>>>>>>>>>>>>>>>>>> ["value"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(23) "echo_output=Hello World" > >>>>>>>>>>>>>>>>>>>>>>>>> ["type"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(0) > >>>>>>>>>>>>>>>>>>>>>>>>> ["metaData"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>>>>>>>} > >>>>>>>>>>>>>>>>>>>>>>>>>} > >>>>>>>>>>>>>>>>>>>>>>>>>["experimentOutputs"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>array(1) { > >>>>>>>>>>>>>>>>>>>>>>>>>[0]=> > >>>>>>>>>>>>>>>>>>>>>>>>> > >>>object(Airavata\Model\Workspace\Experiment\DataObjectType)#10 > >>>>>>>>>>>>>>>>>>>>(4) { > >>>>>>>>>>>>>>>>>>>>>>>>> ["key"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(11) "echo_output" > >>>>>>>>>>>>>>>>>>>>>>>>> ["value"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(0) "" > >>>>>>>>>>>>>>>>>>>>>>>>> ["type"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(0) > >>>>>>>>>>>>>>>>>>>>>>>>> ["metaData"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>>>>>>>} > >>>>>>>>>>>>>>>>>>>>>>>>>} > >>>>>>>>>>>>>>>>>>>>>>>>>["experimentStatus"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> > >>>object(Airavata\Model\Workspace\Experiment\ExperimentStatus)#11 > >>>>>>>>>>>>>>>>>>>>(2) { > >>>>>>>>>>>>>>>>>>>>>>>>>["experimentState"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>int(3) > >>>>>>>>>>>>>>>>>>>>>>>>>["timeOfStateChange"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>int(1405021142702) > >>>>>>>>>>>>>>>>>>>>>>>>>} > >>>>>>>>>>>>>>>>>>>>>>>>>["stateChangeList"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>array(1) { > >>>>>>>>>>>>>>>>>>>>>>>>>[0]=> > >>>>>>>>>>>>>>>>>>>>>>>>> > >>>object(Airavata\Model\Workspace\Experiment\WorkflowNodeStatus)#12 > >>>>>>>>>>>>>>>>>>>>(2) { > >>>>>>>>>>>>>>>>>>>>>>>>>["workflowNodeState"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(7) > >>>>>>>>>>>>>>>>>>>>>>>>> ["timeOfStateChange"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(1405021142334) > >>>>>>>>>>>>>>>>>>>>>>>>>} > >>>>>>>>>>>>>>>>>>>>>>>>>} > >>>>>>>>>>>>>>>>>>>>>>>>>["workflowNodeDetailsList"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>array(1) { > >>>>>>>>>>>>>>>>>>>>>>>>>[0]=> > >>>>>>>>>>>>>>>>>>>>>>>>> > >>>object(Airavata\Model\Workspace\Experiment\WorkflowNodeDetails)#13 > >>>>>>>>>>>>>>>>>>>>(10) { > >>>>>>>>>>>>>>>>>>>>>>>>>["nodeInstanceId"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(51) > >>>>>>>>>>>>>>>>>>>>"IDontNeedaNode_320649b3-450b-4bdb-89cf-70a95ccb817e" > >>>>>>>>>>>>>>>>>>>>>>>>>["creationTime"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(1405021142316) > >>>>>>>>>>>>>>>>>>>>>>>>> ["nodeName"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(14) "IDontNeedaNode" > >>>>>>>>>>>>>>>>>>>>>>>>> ["executionUnit"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(1) > >>>>>>>>>>>>>>>>>>>>>>>>> ["executionUnitData"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>>>>>>> ["nodeInputs"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> array(0) { > >>>>>>>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>>>>>> ["nodeOutputs"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> array(0) { > >>>>>>>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>>>>>> ["workflowNodeStatus"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> > >>>object(Airavata\Model\Workspace\Experiment\WorkflowNodeStatus)#14 > >>>>>>>>>>>>>>>>>>>>(2) { > >>>>>>>>>>>>>>>>>>>>>>>>>["workflowNodeState"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(7) > >>>>>>>>>>>>>>>>>>>>>>>>> ["timeOfStateChange"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(1405021142334) > >>>>>>>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>>>>>> ["taskDetailsList"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> array(1) { > >>>>>>>>>>>>>>>>>>>>>>>>> [0]=> > >>>>>>>>>>>>>>>>>>>>>>>>> > >>>object(Airavata\Model\Workspace\Experiment\TaskDetails)#15 > >>>>>>>>>>>>>>>>>>>>(14) { > >>>>>>>>>>>>>>>>>>>>>>>>> ["taskID"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(51) > >>>>>>>>>>>>>>>>>>>>"IDontNeedaNode_c2f6d21f-cd12-45c3-814f-a9c903fa5bde" > >>>>>>>>>>>>>>>>>>>>>>>>>["creationTime"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>>>>>>> ["applicationId"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(11) "SimpleEcho2" > >>>>>>>>>>>>>>>>>>>>>>>>> ["applicationVersion"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>>>>>>> ["applicationDeploymentId"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>>>>>>> ["applicationInputs"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> array(1) { > >>>>>>>>>>>>>>>>>>>>>>>>> [0]=> > >>>>>>>>>>>>>>>>>>>>>>>>> > >>>object(Airavata\Model\Workspace\Experiment\DataObjectType)#16 (4) { > >>>>>>>>>>>>>>>>>>>>>>>>> ["key"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(10) "echo_input" > >>>>>>>>>>>>>>>>>>>>>>>>> ["value"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(23) "echo_output=Hello World" > >>>>>>>>>>>>>>>>>>>>>>>>> ["type"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(0) > >>>>>>>>>>>>>>>>>>>>>>>>> ["metaData"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>>>>>> ["applicationOutputs"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> array(1) { > >>>>>>>>>>>>>>>>>>>>>>>>> [0]=> > >>>>>>>>>>>>>>>>>>>>>>>>> > >>>object(Airavata\Model\Workspace\Experiment\DataObjectType)#17 (4) { > >>>>>>>>>>>>>>>>>>>>>>>>> ["key"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(11) "echo_output" > >>>>>>>>>>>>>>>>>>>>>>>>> ["value"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(0) "" > >>>>>>>>>>>>>>>>>>>>>>>>> ["type"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(0) > >>>>>>>>>>>>>>>>>>>>>>>>> ["metaData"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>>>>>> ["taskScheduling"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> > >>>object(Airavata\Model\Workspace\Experiment\ComputationalResourceScheduling)#18 > >>>>>>>>>>>>>>>>>>>>(9) { > >>>>>>>>>>>>>>>>>>>>>>>>>["resourceHostId"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(17) "trestles.sdsc.edu" > >>>>>>>>>>>>>>>>>>>>>>>>> ["totalCPUCount"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(1) > >>>>>>>>>>>>>>>>>>>>>>>>> ["nodeCount"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(1) > >>>>>>>>>>>>>>>>>>>>>>>>> ["numberOfThreads"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(0) > >>>>>>>>>>>>>>>>>>>>>>>>> ["queueName"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> string(6) "normal" > >>>>>>>>>>>>>>>>>>>>>>>>> ["wallTimeLimit"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(15) > >>>>>>>>>>>>>>>>>>>>>>>>> ["jobStartTime"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(566815272) > >>>>>>>>>>>>>>>>>>>>>>>>> ["totalPhysicalMemory"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(0) > >>>>>>>>>>>>>>>>>>>>>>>>> ["computationalProjectAccount"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>>>>>> ["advancedInputDataHandling"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>>>>>>> ["advancedOutputDataHandling"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> NULL > >>>>>>>>>>>>>>>>>>>>>>>>> ["taskStatus"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> > >>>object(Airavata\Model\Workspace\Experiment\TaskStatus)#19 > >>>>>>>>>>>>>>>>>>>>(2) { > >>>>>>>>>>>>>>>>>>>>>>>>>["executionState"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(12) > >>>>>>>>>>>>>>>>>>>>>>>>> ["timeOfStateChange"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> int(1405021142382) > >>>>>>>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>>>>>> ["jobDetailsList"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> array(0) { > >>>>>>>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>>>>>> ["dataTransferDetailsList"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> array(0) { > >>>>>>>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>>>>>> ["errors"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> array(0) { > >>>>>>>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>>>>>> ["errors"]=> > >>>>>>>>>>>>>>>>>>>>>>>>> array(0) { > >>>>>>>>>>>>>>>>>>>>>>>>> } > >>>>>>>>>>>>>>>>>>>>>>>>>} > >>>>>>>>>>>>>>>>>>>>>>>>>} > >>>>>>>>>>>>>>>>>>>>>>>>>["errors"]=> > >>>>>>>>>>>>>>>>>>>>>>>>>NULL > >>>>>>>>>>>>>>>>>>>>>>>>>} > >>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>john@anya > >>>:/media/mdhpss/scigap/phpclientsamples/airavata/airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/php-cli-samples$ > >>>>>>>>>>>>>>>>>>>>>>>>>On Thu, Jul 10, 2014 at 03:32:03PM -0400, Marlon > >>>Pierce > >>>>>>>>>>>>>>>>>>>>>>>>>wrote: > >>>>>>>>>>>>>>>>>>>>>>>>>>Yes, probably a casualty of our updates. > >>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>Marlon > >>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>On 7/10/14, 3:19 PM, K Yoshimoto wrote: > >>>>>>>>>>>>>>>>>>>>>>>>>>>I launched a test experiment yesterday, but it > >>>hasn't > >>>>>>>>>>>>>>>>>>>>>>>>>>>changed from > >>>>>>>>>>>>>>>>>>>>>>>>>>>LAUNCHED status. Should it go into running > >>>>>>>>>>>>>>>>>>>>>>>>>>>fairly > >>>>>>>>>>>>>>>>>>>>>>>>>>>quickly? > >>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>php getExperimentStatus.php > >>>>>>>>>>>>>>>>>>>>>>>>>>>kennethexp1_5497b1a2-721e-4690-9e4c-e0f24693c5c1 > >>>>>>>>>>>>>>>>>>>>>>>>>>>experiment status = LAUNCHED > >>>>>>>>>>>>>>>>>>>>>>>>>>><br> > >>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>On Thu, Jul 10, 2014 at 06:03:12AM -0400, Marlon > >>>>>>>>>>>>>>>>>>>>>>>>>>>Pierce wrote: > >>>>>>>>>>>>>>>>>>>>>>>>>>>>He'll still need his classpath set properly to > >>>run > >>>>>>>>>>>>>>>>>>>>>>>>>>>>them > >>>>>>>>>>>>>>>>>>>>>>>>>>>>from the > >>>>>>>>>>>>>>>>>>>>command > >>>>>>>>>>>>>>>>>>>>>>>>>>>>line. Do we have instructions for this? > >>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>Also, the lowest level pom.xml file is > >>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>airavata/airavata-api//airavata-client-sdks/java-client-samples/pom.xml > >>>>>>>>>>>>>>>>>>>>>>>>>>>>so that is where to run "mvn clean install" if > >>>>>>>>>>>>>>>>>>>>>>>>>>>>recompiling > >>>>>>>>>>>>>>>>>>>>>>>>>>>>after > >>>>>>>>>>>>>>>>>>>>making > >>>>>>>>>>>>>>>>>>>>>>>>>>>>changes. > >>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>Or use an IDE to manage recompiles, I guess. > >>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>Marlon > >>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>On 7/9/14, 9:01 PM, Suresh Marru wrote: > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>Hi Kenneth, > >>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>Airavata uses Maven as the build system. Once > >>>you > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>checkout > >>>>>>>>>>>>>>>>>>>>Airavata, you > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>should be able to build "mvn clean install > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>-DskipTests=true -f > >>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>airavata-api/airavata-client-sdks/java-client-samples/pom.xml" > >>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>If you are building from git master, you may > >>>need to > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>build the > >>>>>>>>>>>>>>>>>>>>whole of > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>airavata repo. Alternatively, users are > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>provided > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>with > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>binaries. > >>>>>>>>>>>>>>>>>>>>And > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>changes to samples with release versions can be > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>build > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>without > >>>>>>>>>>>>>>>>>>>>having to > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>build the whole repo. > >>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>As an example, if you modify samples within > >>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>https://github.com/apache/airavata/tree/airavata-0.12 you > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>can > >>>>>>>>>>>>>>>>>>>>just go to > >>>>>>>>>>>>>>>>>>>> > >>>airavata/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples > >>>>>>>>>>>>>>>>>>>>and build just the changed samples by running mvn clean > >>>>>>>>>>>>>>>>>>>>install > >>>>>>>>>>>>>>>>>>>>-DskipTests=true. > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>Long story short, release artifacts are > >>>published > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>to maven > >>>>>>>>>>>>>>>>>>>>central, so > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>building a module will pull the artifacts from > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>maven central > >>>>>>>>>>>>>>>>>>>>repo - > >>>>>>>>>>>>>>>http://search.maven.org/#search%7Cga%7C1%7Capache%20airavata > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>Suresh > >>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>On Jul 9, 2014, at 7:38 PM, K Yoshimoto > >>>>>>>>>>>>>>>>>>>>>>>>>>>>><kenn...@sdsc.edu> > >>>>>>>>>>>>>>>>>>>>wrote: > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Another question: is there a Makefile for the > >>>java > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>examples? > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>airavata/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>On Wed, Jul 09, 2014 at 04:32:21PM -0400, > >>>Suresh > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Marru > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>wrote: > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Hi Kenneth, > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>I changed the script names to patch the API > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>function > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>names. > >>>>>>>>>>>>>>>>>>>>So it is > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>now > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>- registerComputeResource.php > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>I am going to finish up the Wiki articles [1] > >>>will > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>describe > >>>>>>>>>>>>>>>>>>>>all the > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>functions you can do and available samples. > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Suresh > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>[1] - > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>https://cwiki.apache.org/confluence/display/AIRAVATA/Airavata+API+PHP+Client+Samples > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>On Jul 9, 2014, at 4:25 PM, K Yoshimoto > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><kenn...@sdsc.edu > >>>>>>>>>>>>>>>>>>>>wrote: > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>I did a git pull, and > >>>add-compute-resource.php > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>does > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>not seem > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>to be there anymore. Should it still be > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>available? > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>On Thu, Jul 03, 2014 at 01:34:18PM -0700, K > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Yoshimoto > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>wrote: > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Thanks, Marlon and Suresh. I'll poke > >>>through > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>the app > >>>>>>>>>>>>>>>>>>>>catalog api > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>and try out the examples in the new README > >>>next > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>week. > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Kenneth > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>On Thu, Jul 03, 2014 at 04:19:21PM -0400, > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Marlon Pierce > >>>>>>>>>>>>>>>>>>>>wrote: > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>In short, though, if a script in this > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>directory is > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>not in > >>>>>>>>>>>>>>>>>>>>the > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>README, it is using the App Catalog part > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>of > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>the API. > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>add-compute-resource.php does some of what > >>>you > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>are > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>looking > >>>>>>>>>>>>>>>>>>>>for > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>below. I'll make some quick updates to the > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>readme. > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Marlon > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>On 7/3/14, 4:06 PM, Suresh Marru wrote: > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Hi Kenneth, > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>I plan to modify the README to describe > >>>the > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>use cases > >>>>>>>>>>>>>>>>>>>>including the > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>one you mention below. Will try to get > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>all > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>that done > >>>>>>>>>>>>>>>>>>>>before Monday. > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Suresh > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>On Jul 3, 2014, at 4:04 PM, Marlon Pierce > >>>< > >>>>>>>>>>>>>>>>>>>>marpi...@iu.edu> wrote: > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Hi Kenneth-- > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>At the API level, those are part of the > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Application > >>>>>>>>>>>>>>>>>>>>Catalog. At > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>the implementation level, they are done > >>>by > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>GFAC > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>plugins > >>>>>>>>>>>>>>>>>>>>(GSI-SSH > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>plugin in this case). These are new > >>>(not > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>yet in the > >>>>>>>>>>>>>>>>>>>>README), may > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>be missing some examples. > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Marlon > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>On 7/3/14, 3:45 PM, K Yoshimoto wrote: > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Are there methods in the API for > >>>creating > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>working > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>dirs > >>>>>>>>>>>>>>>>>>>>on the > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>compute resource, staging input data, > >>>and > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>running > >>>>>>>>>>>>>>>>>>>>submit wrapper > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>scripts? > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>I'm looking at: > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>https://github.com/SciGaP/Airavata-PHP-Client-Samples/blob/master/client-samples/README-PHP-CLI-Examples.txt > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>and browsing through: > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > >>>airavata/airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/lib/Airavata/API/Airavata.php > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>but it looks like the interactions with > >>>the > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>compute > >>>>>>>>>>>>>>>>>>>>resource are > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>deeper > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>down... > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>To unsubscribe from this group and stop > >>>receiving > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>emails > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>from > >>>>>>>>>>>>>>>>>>>>it, send an > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>email to dev+unsubscr...@scigap.org. > >>>>>>>>>>>>>>>>>>>>>>>>>>>To unsubscribe from this group and stop receiving > >>>>>>>>>>>>>>>>>>>>>>>>>>>emails > >>>>>>>>>>>>>>>>>>>>>>>>>>>from 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