Thanks, Lahiru. I'll change to execute mode and use that for startup for now.
Kenneth On Tue, Oct 14, 2014 at 07:14:27PM -0400, Lahiru Gunathilake wrote: > Hi Kenneth, > > I was able to reproduce the issue with Ubuntu. My sugession works fine but > I will look in to this and fix it to work with all cases. > > Thanks for pointing this out. > > Again: I think ./airavata-server.sh will work. > > Regards > Lahiru > > On Tue, Oct 14, 2014 at 7:11 PM, Lahiru Gunathilake <[email protected]> > wrote: > > > Hi Kennath, > > > > I am not sure why it is but if you give execute permission you can try. I > > remember having the same issue with some projects I used when I use ubuntu > > bash. > > > > Ex: > > > > sh ./zkServer.sh start > > > > JMX enabled by default > > > > ./zkServer.sh: 81: /usr/local/zookeeper/zookeeper-3.4.6/bin/zkEnv.sh: > > Syntax error: "(" unexpected (expecting "fi") > > > > sgg@sgg-OptiPlex-990:/usr/local/zookeeper/zookeeper-3.4.6/bin$ > > > > sgg@sgg-OptiPlex-990:/usr/local/zookeeper/zookeeper-3.4.6/bin$ > > > > sgg@sgg-OptiPlex-990:/usr/local/zookeeper/zookeeper-3.4.6/bin$ sh > > zkServer.sh star > > > > JMX enabled by default > > > > zkServer.sh: 81: /usr/local/zookeeper/zookeeper-3.4.6/bin/zkEnv.sh: Syntax > > error: "(" unexpected (expecting "fi") > > > > sgg@sgg-OptiPlex-990:/usr/local/zookeeper/zookeeper-3.4.6/bin$ > > ./zkServer.sh start > > > > JMX enabled by default > > > > Using config: /usr/local/zookeeper/zookeeper-3.4.6/bin/../conf/zoo.cfg > > > > Starting zookeeper ... STARTED > > > > On Tue, Oct 14, 2014 at 7:08 PM, K Yoshimoto <[email protected]> wrote: > > > >> > >> As unpacked from the distribition, it does not have execute mode > >> set: > >> > >> ./airavata-server.sh > >> bash: ./airavata-server.sh: Permission denied > >> > >> > >> On Tue, Oct 14, 2014 at 07:05:31PM -0400, Lahiru Gunathilake wrote: > >> > Hi Kennath, > >> > > >> > Can you please try ./airavata-server.sh ? > >> > > >> > Regards > >> > Lahiru > >> > > >> > On Tue, Oct 14, 2014 at 6:55 PM, K Yoshimoto <[email protected]> wrote: > >> > > >> > > > >> > > sh ./airavata-server.sh > >> > > > >> > > On Tue, Oct 14, 2014 at 04:20:13PM -0400, Saminda Wijeratne wrote: > >> > > > Just curious, are you starting the server like, > >> > > > > >> > > > $ sh airavata-server.sh > >> > > > > >> > > > or > >> > > > > >> > > > $ ./airavata-server.sh > >> > > > > >> > > > > >> > > > > >> > > > On Tue, Oct 14, 2014 at 1:55 PM, K Yoshimoto <[email protected]> > >> wrote: > >> > > > > >> > > > > > >> > > > > Yes, something is probably sitting on the port. But should I > >> > > > > comment out the syntax error part of airavata-server.sh for > >> > > > > startup? > >> > > > > > >> > > > > On Tue, Oct 14, 2014 at 01:44:55PM -0400, Marlon Pierce wrote: > >> > > > > > I'm guessing you have some old processes that you may need to > >> > > manually > >> > > > > > kill (ps -elf|grep java to find). > >> > > > > > > >> > > > > > Marlon > >> > > > > > > >> > > > > > On 10/14/14, 1:38 PM, K Yoshimoto wrote: > >> > > > > > >It gets further, then stops with an address-in-use, maybe > >> unrelated > >> > > > > issue. > >> > > > > > > > >> > > > > > > > >> > > > > > >... > >> > > > > > >[INFO] Finished starting ZK: State:CONNECTED Timeout:6000 > >> > > > > > >sessionid:0x1490fb31c030003 local:/127.0.0.1:42013 > >> > > > > > >remoteserver:localhost/127.0.0.1:2181 lastZxid:13 xid:8 sent:8 > >> > > recv:9 > >> > > > > > >queuedpkts:0 pendingresp:0 queuedevents:0 > >> > > > > > >[ERROR] Cannot connect to a RabbitMQ Server: > >> > > > > > >java.net.ConnectException: Connection refused > >> > > > > > > at java.net.PlainSocketImpl.socketConnect(Native > >> Method) > >> > > > > > > at > >> > > > > > > > >> > > > > > >> > > > >> java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:327) > >> > > > > > > at > >> > > > > > > > >> > > > > > >> > > > >> java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:193) > >> > > > > > > at > >> > > > > > > > >> > > > > > >> > > > >> java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:180) > >> > > > > > > at > >> > > java.net.SocksSocketImpl.connect(SocksSocketImpl.java:385) > >> > > > > > > at java.net.Socket.connect(Socket.java:546) > >> > > > > > > at > >> > > > > > > > >> > > > > > >> > > > >> com.rabbitmq.client.ConnectionFactory.createFrameHandler(ConnectionFactory.java:445) > >> > > > > > > at > >> > > > > > > > >> > > > > > >> > > > >> com.rabbitmq.client.ConnectionFactory.newConnection(ConnectionFactory.java:504) > >> > > > > > > at > >> > > > > > > > >> > > > > > >> > > > >> com.rabbitmq.client.ConnectionFactory.newConnection(ConnectionFactory.java:533) > >> > > > > > > at > >> > > > > > > > >> > > > > > >> > > > >> org.apache.airavata.gfac.monitor.impl.push.amqp.SimpleJobFinishConsumer.listen(SimpleJobFinishConsumer.java:50) > >> > > > > > > at > >> > > > > > > > >> > > > > > >> > > > >> org.apache.airavata.gfac.monitor.impl.pull.qstat.HPCPullMonitor.<init>(HPCPullMonitor.java:96) > >> > > > > > > at > >> > > > > > > > >> > > > > > >> > > > >> org.apache.airavata.gfac.monitor.handlers.GridPullMonitorHandler.initProperties(GridPullMonitorHandler.java:71) > >> > > > > > > at > >> > > > > > > > >> > > > > > >> > > > >> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.startDaemonHandlers(BetterGfacImpl.java:181) > >> > > > > > > at > >> > > > > > > > >> > > > > > >> > > > >> org.apache.airavata.gfac.server.GfacServerHandler.<init>(GfacServerHandler.java:108) > >> > > > > > > at > >> > > > > > > > >> > > > > > >> org.apache.airavata.gfac.server.GfacServer.start(GfacServer.java:102) > >> > > > > > > at > >> > > > > > > > >> > > > > > >> > > > >> org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:289) > >> > > > > > > at > >> > > > > > > > >> > > > > > >> > > > >> org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:141) > >> > > > > > > at > >> > > > > org.apache.airavata.server.ServerMain.main(ServerMain.java:130) > >> > > > > > >[INFO] ------------- Push monitoring for HPC jobs is disabled > >> > > > > ------------- > >> > > > > > >[INFO] Registering listener: > >> > > > > > >org.apache.airavata.gfac.core.monitor.AiravataJobStatusUpdator > >> > > > > > >[INFO] Registering listener: > >> > > > > > >org.apache.airavata.gfac.core.monitor.AiravataTaskStatusUpdator > >> > > > > > >[INFO] Registering listener: > >> > > > > > > >> > > > >> >org.apache.airavata.gfac.core.monitor.AiravataWorkflowNodeStatusUpdator > >> > > > > > >[INFO] Registering listener: > >> > > > > > > >> > > > >> >org.apache.airavata.api.server.listener.AiravataExperimentStatusUpdator > >> > > > > > >[INFO] Registering listener: > >> > > > > > >org.apache.airavata.gfac.core.monitor.GfacInternalStatusUpdator > >> > > > > > >[INFO] Registering listener: > >> > > > > > >org.apache.airavata.workflow.engine.util.ProxyMonitorPublisher > >> > > > > > >[INFO] Starting Gfac Server on Port 8950 > >> > > > > > >[INFO] Listening to Gfac Clients .... > >> > > > > > >Tue Oct 14 10:29:07 PDT 2014 : Could not listen on port 1527 > >> on host > >> > > > > > >0.0.0.0: > >> > > > > > > java.net.BindException: Address already in use > >> > > > > > >[INFO] Database already created for App Catalog! > >> > > > > > >[INFO] Starting Airavata Workflow Server on Port 8931 > >> > > > > > >[INFO] Listening to Workflow API Clients .... > >> > > > > > > > >> > > > > > > > >> > > > > > > > >> > > > > > >On Tue, Oct 14, 2014 at 01:21:42PM -0400, Saminda Wijeratne > >> wrote: > >> > > > > > >>If you comment-out or remove the section relating to > >> > > "f_split=(${f//_/ > >> > > > > > >>});", does the script works for you afterwards as expected to > >> > > start the > >> > > > > > >>server? > >> > > > > > >> > >> > > > > > >>On Tue, Oct 14, 2014 at 1:06 PM, K Yoshimoto < > >> [email protected]> > >> > > wrote: > >> > > > > > >> > >> > > > > > >>>I'm running Ubuntu 12.04LTS. > >> > > > > > >>> > >> > > > > > >>>On Tue, Oct 14, 2014 at 11:11:36AM -0400, Chathuri Wimalasena > >> > > wrote: > >> > > > > > >>>>Hi Kenneth, > >> > > > > > >>>> > >> > > > > > >>>>I was able to build and run airavata server in ubuntu 12.10 > >> > > without > >> > > > > any > >> > > > > > >>>>issues. > >> > > > > > >>>> > >> > > > > > >>>>Thanks.. > >> > > > > > >>>>Chathuri > >> > > > > > >>>> > >> > > > > > >>>>On Mon, Oct 13, 2014 at 9:05 AM, Marlon Pierce < > >> [email protected]> > >> > > > > wrote: > >> > > > > > >>>> > >> > > > > > >>>>>Hi Kenneth-- > >> > > > > > >>>>> > >> > > > > > >>>>>What OS are you using? > >> > > > > > >>>>> > >> > > > > > >>>>>Marlon > >> > > > > > >>>>> > >> > > > > > >>>>> > >> > > > > > >>>>>On 10/11/14, 2:23 PM, K Yoshimoto wrote: > >> > > > > > >>>>> > >> > > > > > >>>>>>It looks like this line: > >> > > > > > >>>>>> > >> > > > > > >>>>>> f_split=(${f//_/ }); > >> > > > > > >>>>>> > >> > > > > > >>>>>> > >> > > > > > >>>>>>apache-airavata-server-0.14-SNAPSHOT/bin$ sh > >> airavata-server.sh > >> > > > > > > >> >>>>>>...._....................._..............._...._............ > >> > > > > > >>>>>>.........._......... > >> > > > > > >>>>>>.../ \..._.__...__._..___| |__...___...../ > >> > > > > > >>>\..(_)_.__.__.___...____._|.|_ > >> > > > > > >>>>>>.__._.. > >> > > > > > >>>>>>../ _ \.| '_ \./ _` |/ __| '_ \./ _ \.../ _ \.| | '__/ _` > >> \ > >> > > \./ / > >> > > > > _` | > >> > > > > > >>>>>>__/ _` |. > >> > > > > > >>>>>>./ ___ \| |_) | (_| | (__| |.| | __/../ ___ \| | |.| (_| > >> |\ V > >> > > / > >> > > > > (_| > >> > > > > > >>>| || > >> > > > > > >>>>>>(_| |. > >> > > > > > >>>>>>/_/...\_\ > >> > > > > .__/.\__,_|\___|_|.|_|\___|./_/...\_\_|_|..\__,_|.\_/.\__,_| > >> > > > > > >>>>>>\__\__,_|. > >> > > > > > > >> >>>>>>........|_|................................................. > >> > > > > > >>>>>>.................... > >> > > > > > > >> >>>>>>............................................................ > >> > > > > > >>>>>>.................... > >> > > > > > > >> >>>>>>................,+????++~..~~++..+????????+??++.++~...~+=??? > >> > > > > > >>>>>>+++................. > >> > > > > > > >> >>>>>>..............:???????....:::...~??????????????.~..::...=??? > >> > > > > > >>>>>>?????............... > >> > > > > > > >> >>>>>>............????????..~~..?????..??????????????.?????..~~~.~ > >> > > > > > >>>>>>???????............. > >> > > > > > > >> >>>>>>...........?????????I,~I~~??????.+????????????.~??????~=~..? > >> > > > > > >>>>>>????????~........... > >> > > > > > > >> >>>>>>.........?????++??????..????????:.??????????I..????????..??? > >> > > > > > >>>>>>?????+????.......... > >> > > > > > > >> >>>>>>........??.....???????....???????...???????+..+??????+.I.??? > >> > > > > > >>>>>>?????.....?,........ > >> > > > > > > >> >>>>>>........????==????????..??..?????..=???????=..?????,.=+?.??? > >> > > > > > >>>>>>??????===??=........ > >> > > > > > > >> >>>>>>......=??????????+????..+??=.???=.~??????????,.???=,???,.??? > >> > > > > > >>>>>>?=+??????????....... > >> > > > > > > >> >>>>>>....??????????+...+I++..???,=...:??????????????.....+??..++ > >> > > > > > >>>>>>I?+..,??????????..... > >> > > > > > > >> >>>>>>....???????=??..........??..+??.:=:.???????......??..??=.... > >> > > > > > >>>>>>......?=???????=.... > >> > > > > > > >> >>>>>>....??????..?...........+?..???.....???????......???.??..... > >> > > > > > >>>>>>......~=.??????=.... > >> > > > > > > >> >>>>>>....~???~.~..............?..???.~=..,??????...7..???.?.:.... > >> > > > > > >>>>>>..........~????:.... > >> > > > > > >>>>>>...7....7 ...............?..????. ...??????... > >> > > > > .????.?.?.............I > >> > > > > > >>>>>>..:.:.... > >> > > > > > > >> >>>>>>.....+7=,.+?................????:,I...?????..=.?????.?...... > >> > > > > > >>>>>>.......??~.=7+...... > >> > > > > > > >> >>>>>>..........????..............??????~...~??..~~??????..?...... > >> > > > > > >>>>>>.....+???,.......... > >> > > > > > > >> >>>>>>...........???............=.+???????,.?+:.?????????..+...... > >> > > > > > >>>>>>.....???+........... > >> > > > > > > >> >>>>>>............??............?,.??????.,??..??????????.,....... > >> > > > > > >>>>>>.....???............ > >> > > > > > > >> >>>>>>...........??,.............=.,????.?+....????????I.I........ > >> > > > > > >>>>>>......=?............ > >> > > > > > > >> >>>>>>..........I?..................+??.:?~.....=??????........... > >> > > > > > >>>>>>.......??........... > >> > > > > > > >> >>>>>>..........??...?...............??.:?=......??????........... > >> > > > > > >>>>>>...?...??........... > >> > > > > > > >> >>>>>>............++?..............?.????...?....??????.+......... > >> > > > > > >>>>>>.....++I............ > >> > > > > > > >> >>>>>>.............................?.??????~....???????.?......... > >> > > > > > >>>>>>.................... > >> > > > > > > >> >>>>>>............................~~.??????......??????........... > >> > > > > > >>>>>>.................... > >> > > > > > > >> >>>>>>.............................=???????......???????+......... > >> > > > > > >>>>>>.................... > >> > > > > > > >> >>>>>>..........................=I??++?+++?......?+++++++?+....... > >> > > > > > >>>>>>.................... > >> > > > > > >>>>>>..........................,..77..77......... .. > >> > > > > > >>>>>>...7.......................... > >> > > > > > > >> >>>>>>............................................................ > >> > > > > > >>>>>>.................... > >> > > > > > >>>>>>airavata-server.sh: 86: airavata-server.sh: Syntax error: > >> "(" > >> > > > > > >>>unexpected > >> > > > > > >>>>>>(expecting "done") > >> > > > > > >>>>>> > >> > > > > > >>>>>>bash --version > >> > > > > > >>>>>>GNU bash, version 4.2.25(1)-release (x86_64-pc-linux-gnu) > >> > > > > > >>>>>>Copyright (C) 2011 Free Software Foundation, Inc. > >> > > > > > >>>>>>License GPLv3+: GNU GPL version 3 or later < > >> > > > > > >>>http://gnu.org/licenses/gpl. > >> > > > > > >>>>>>html> > >> > > > > > >>>>>> > >> > > > > > >>>>>>This is free software; you are free to change and > >> redistribute > >> > > it. > >> > > > > > >>>>>>There is NO WARRANTY, to the extent permitted by law. > >> > > > > > >>>>>> > >> > > > > > >>>>>> > >> > > > > > >>>>>>On Sat, Oct 11, 2014 at 01:47:45PM -0400, Raminder Singh > >> wrote: > >> > > > > > >>>>>> > >> > > > > > >>>>>>>I build everything from head this morning and did not run > >> > > into any > >> > > > > > >>>>>>>problem. I am using Airavata distribution in > >> > > > > > >>>modules/distribution/server/ > >> > > > > > >>>>>>>target/apache-airavata-server-0.14-SNAPSHOT-bin.tar.gz. > >> Only > >> > > > > > >>>exception > >> > > > > > >>>>>>>i am getting is related to RabbitMQ server but this is a > >> > > optional > >> > > > > > >>>service. > >> > > > > > >>>>>>> 2014-10-11 13:44:45,800 [main] ERROR > >> > > org.apache.airavata.gfac. > >> > > > > > >>>>>>>monitor.impl.push.amqp.SimpleJobFinishConsumer - Cannot > >> > > connect > >> > > > > to a > >> > > > > > >>>>>>>RabbitMQ Server: > >> > > > > > >>>>>>>java.net.ConnectException: Connection refused > >> > > > > > >>>>>>> > >> > > > > > >>>>>>>Please share more details about the failure. > >> > > > > > >>>>>>> > >> > > > > > >>>>>>>Thanks > >> > > > > > >>>>>>>Raminder > >> > > > > > >>>>>>> > >> > > > > > >>>>>>>On Oct 10, 2014, at 7:01 PM, K Yoshimoto < > >> [email protected]> > >> > > > > wrote: > >> > > > > > >>>>>>> > >> > > > > > >>>>>>> I'm getting an error when trying to startup an airavata > >> > > server: > >> > > > > > >>>>>>>>airavata-server.sh: 86: airavata-server.sh: Syntax > >> error: "(" > >> > > > > > >>>>>>>>unexpected (expecting "done") > >> > > > > > >>>>>>>> > >> > > > > > >>>>>>>> > >> > > > > > >>>>>>>> > >> > > > > > >> > > > >> > > >> > > >> > > >> > -- > >> > Research Assistant > >> > Science Gateways Group > >> > Indiana University > >> > > > > > > > > -- > > Research Assistant > > Science Gateways Group > > Indiana University > > > > > > -- > Research Assistant > Science Gateways Group > Indiana University
