Can you see your xslt in <airavata-16-SNAPSHOT>/bin directory ? On Fri, Feb 26, 2016 at 11:03 AM, Eric Kuijt <erick...@gmail.com> wrote:
> I did depersonalize the path for a bit.. > But it is double in the logs. > > On Fri Feb 26 16:56:31 2016 GMT+0100, Pierce, Marlon wrote: > > Hi Eric, is the path "/home/path/to/“ in your message below a verbatim > error message, or did you change to remove your specific path? > > > > From: Eric Kuyt <eric.ku...@wur.nl<mailto:eric.ku...@wur.nl>> > > Reply-To: "dev@airavata.apache.org<mailto:dev@airavata.apache.org>" < > dev@airavata.apache.org<mailto:dev@airavata.apache.org>> > > Date: Friday, February 26, 2016 at 10:52 AM > > To: "dev@airavata.apache.org<mailto:dev@airavata.apache.org>" < > dev@airavata.apache.org<mailto:dev@airavata.apache.org>> > > Subject: Re: Adding a SGE resourceJobManagerType > > > > Hey All, > > > > I'm almost there! Ran the three steps (Only difference with UGE is -pe > in the xslt file to build the pbs) so I use the UGE parse/config classes. > Love thrift btw! > > > > But now, when I run My newly generated SGE it seems not to find the xslt > file... > > > > error message is. > > > > > /home/path/to/apache-airavata-server-0.16-SNAPSHOT/bin/file:/home/path/to/ > > !/SGETemplate.xslt (No such file or directory) > > > > airavata-gfac-impl-0.16-SNAPSHOT.jar, seems to contain the xslt. > > > > jar -tf lib/airavata-gfac-impl-0.16-SNAPSHOT.jar |grep Template > > SGETemplate.xslt > > PBSTemplate.xslt > > UGETemplate.xslt > > SLURMTemplate.xslt > > ForkTemplate.xslt > > LSFTemplate.xslt > > > > > > The path seems to be printed double, Could this be the problem? PBS > doesn't seem to have this problem. > > > > Thanks! > > > > Eric > > > > On 24 February 2016 at 16:17, Shameera Rathnayaka < > shameerai...@gmail.com<mailto:shameerai...@gmail.com>> wrote: > > Hi Eric, > > > > There are couple of things you need to do to add a new jobmanager type. > > > > 1. Configure your SGE resource type in gfac yaml config file > (airavata/modules/configuration/server/src/main/resources/gfac-config.yaml.config). > As you can see you need to provide an output parser and email parser for > your SGE, Unless you can't use existing implementations you need to come up > with your own implementations of these interfaces. > > > > 2. Don't modify thrift generated file, instead add your new > ResourceJobManagerType to > airavata/thrift-interface-descriptions/data-models/resource-catalog-models/compute_resource_model.thrift > file and generate thrift classes. > > > > 3. Come up with SGE JobConfiguration class, and modify > org.apache.airavata.gfac.impl.Factory#getJobManagerConfiguration method to > provide it. You should have xslt template for your SGE script file. > > > > let us know if you hit any issue while you following these steps. > > > > Thanks, > > Shameera. > > > > On Wed, Feb 24, 2016 at 9:53 AM Chathuri Wimalasena < > kamalas...@gmail.com<mailto:kamalas...@gmail.com><mailto: > kamalas...@gmail.com<mailto:kamalas...@gmail.com>>> wrote: > > Hi Eric, > > > > To understand what you did, you added a new ResourceJobManagerType in > the thrift definition as "SGE" ? I assume you generate thrift stubs after > adding it. For that, you need to have thrift 0.93 installed in your system. > > > > Thanks.. > > Chathuri > > > > On Wed, Feb 24, 2016 at 9:03 AM, Eric Kuyt <eric.ku...@wur.nl<mailto: > eric.ku...@wur.nl><mailto:eric.ku...@wur.nl<mailto:eric.ku...@wur.nl>>> > wrote: > > Hey all, I am playing around with airavata and when I can run jobs on my > SGE using PBS but the parsing of qsub / qstat fails. So my jobs never leave > the Executing state. > > > > Now I try to make my own SGEJobConfiguration class. > > Created the class plus outputParser in org.apache.airavata.gfac.impl.job > > > > - add SGE in > /airavata-gfac-impl/src/main/java/org/apache/airavata/gfac/impl/Factory.java > > > > - add SGE in > /airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/computeresource/ResourceJobManagerType.java > > > > - add SGE to > airavata-php-gateway/app/libraries/Airavata/Model/Job/Types.php in PGA. > > > > What should the next step be? if I Wanted to create my own > SGEOutputparser? > > PGA now gives me a Required field 'resourceJobManagerType' is unset! > when I select SGE in the list. > > > > Thanks, > > > > Eric > > > > > > -- > > Central Veterinary Institute of Wageningen UR (CVI) > > Department of Infection Biology > > PO box 65, 8200 AB Lelystad, NL > > Visiting address: ASG, Edelhertweg 15, 8219 PH Lelystad > > > > Tel: +31-(0)320-293391<tel:%2B31-%280%29320-293391> > > Fax: +31-(0)320-238153<tel:%2B31-%280%29320-238153> > > E-mail: eric.ku...@wur.nl<mailto:eric.ku...@wur.nl><mailto: > eric.ku...@wur.nl<mailto:eric.ku...@wur.nl>> > > Web: http://www.cvi.wur.nl > > > > -- > > Shameera Rathnayaka > > > > > > > > -- > > Central Veterinary Institute of Wageningen UR (CVI) > > Department of Infection Biology > > PO box 65, 8200 AB Lelystad, NL > > Visiting address: ASG, Edelhertweg 15, 8219 PH Lelystad > > > > Tel: +31-(0)320-293391 > > Fax: +31-(0)320-238153 > > E-mail: eric.ku...@wur.nl<mailto:eric.ku...@wur.nl> > > Web: http://www.cvi.wur.nl > > > > -- > Sent from my Jolla
