Andrew Onischuk created AMBARI-15282:
----------------------------------------
Summary: Accumulo Service Check fails due to timeout after
deployment
Key: AMBARI-15282
URL: https://issues.apache.org/jira/browse/AMBARI-15282
Project: Ambari
Issue Type: Bug
Reporter: Andrew Onischuk
Assignee: Andrew Onischuk
Fix For: 2.2.2
Attachments: AMBARI-15282.patch
After deployment accumulo service check is failing with the below error.
{
"href" :
"https://172.22.118.198:8443/api/v1/clusters/cl1/requests/5/tasks/188";,
"Tasks" : {
"attempt_cnt" : 1,
"cluster_name" : "cl1",
"command" : "SERVICE_CHECK",
"command_detail" : "SERVICE_CHECK ACCUMULO",
"end_time" : 1456880285591,
"error_log" : "/var/lib/ambari-agent/data/errors-188.txt",
"exit_code" : 1,
"host_name" : "os-r6-ucmvau-ambari-us-21nf-3-5.novalocal",
"id" : 188,
"output_log" : "/var/lib/ambari-agent/data/output-188.txt",
"request_id" : 5,
"role" : "ACCUMULO_SERVICE_CHECK",
"stage_id" : 5,
"start_time" : 1456880242827,
"status" : "FAILED",
"stderr" : "Traceback (most recent call last):\n File
\"/var/lib/ambari-agent/cache/common-services/ACCUMULO/1.6.1.2.2.0/package/scripts/service_check.py\",
line 64, in <module>\n AccumuloServiceCheck().execute()\n File
\"/usr/lib/python2.6/site-packages/resource_management/libraries/script/script.py\",
line 219, in execute\n method(env)\n File
\"/var/lib/ambari-agent/cache/common-services/ACCUMULO/1.6.1.2.2.0/package/scripts/service_check.py\",
line 53, in service_check\n logoutput=True)\n File
\"/usr/lib/python2.6/site-packages/resource_management/core/base.py\", line
154, in __init__\n self.env.run()\n File
\"/usr/lib/python2.6/site-packages/resource_management/core/environment.py\",
line 158, in run\n self.run_action(resource, action)\n File
\"/usr/lib/python2.6/site-packages/resource_management/core/environment.py\",
line 121, in run_action\n provider_action()\n File
\"/usr/lib/python2.6/site-packages/resource_management/core/providers/system.py\",
line 238, in action_run\n tries=self.resource.tries,
try_sleep=self.resource.try_sleep)\n File
\"/usr/lib/python2.6/site-packages/resource_management/core/shell.py\", line
70, in inner\n result = function(command, **kwargs)\n File
\"/usr/lib/python2.6/site-packages/resource_management/core/shell.py\", line
92, in checked_call\n tries=tries, try_sleep=try_sleep)\n File
\"/usr/lib/python2.6/site-packages/resource_management/core/shell.py\", line
140, in _call_wrapper\n result = _call(command, **kwargs_copy)\n File
\"/usr/lib/python2.6/site-packages/resource_management/core/shell.py\", line
285, in _call\n raise
ExecuteTimeoutException(err_msg)\nresource_management.core.exceptions.ExecuteTimeoutException:
Execution of 'ambari-sudo.sh su ambari-qa -l -s /bin/bash -c 'export
PATH='\"'\"'/usr/sbin:/sbin:/usr/lib/ambari-server/*:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/agentslava/bin:/var/lib/ambari-agent'\"'\"'
; /usr/hdp/current/accumulo-client/bin/accumulo shell -u ambari-qa -p smoke -f
/var/lib/ambari-agent/tmp/cmds'' was killed due timeout after 30 seconds",
"stdout" : "2016-03-02 00:57:33,504 - Using hadoop conf dir:
/usr/hdp/current/hadoop-client/conf\n2016-03-02 00:57:33,512 -
File['/var/lib/ambari-agent/tmp/cmds'] {'content': InlineTemplate(...),
'owner': 'ambari-qa', 'group': 'hadoop', 'mode': 0600}\n2016-03-02 00:57:33,578
- Writing File['/var/lib/ambari-agent/tmp/cmds'] because it doesn't
exist\n2016-03-02 00:57:33,627 - Changing owner for
/var/lib/ambari-agent/tmp/cmds from 0 to ambari-qa\n2016-03-02 00:57:33,628 -
Changing group for /var/lib/ambari-agent/tmp/cmds from 0 to hadoop\n2016-03-02
00:57:33,667 - Changing permission for /var/lib/ambari-agent/tmp/cmds from 640
to 600\n2016-03-02 00:57:33,689 -
Execute['/usr/hdp/current/accumulo-client/bin/accumulo shell -u ambari-qa -p
smoke -f /var/lib/ambari-agent/tmp/cmds'] {'logoutput': True, 'user':
'ambari-qa', 'timeout': 30}\n######## Hortonworks #############\nThis is MOTD
message, added for testing in qe infra\n2016-03-02 00:57:36,175
[trace.DistributedTrace] INFO : SpanReceiver
org.apache.accumulo.tracer.ZooTraceClient was loaded successfully.\nrow cf:cq
[] val\n2016-03-02 00:57:38,606 [shell.Shell] INFO : Flush of table
testtable completed.\nrow cf:cq [] val",
"structured_out" : { }
}
This issue is intermittent and is not reproduced in all the runs
Noticed the below in accumulo logs
2016-03-02 01:07:51,101 [tserver.TabletServer] INFO : Waiting for tablet
server lock
2016-03-02 01:07:52,654 [tserver.TabletServer] WARN : Got getScans message
from master before lock acquired, ignoring...
2016-03-02 01:07:52,659 [tserver.TabletServer$ThriftClientHandler] ERROR:
Lock not acquired
java.lang.RuntimeException: Lock not acquired
at
org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.checkPermission(TabletServer.java:1410)
at
org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.getActiveScans(TabletServer.java:1632)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
org.apache.accumulo.core.trace.wrappers.RpcServerInvocationHandler.invoke(RpcServerInvocationHandler.java:39)
at
org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:73)
at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
at
org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
at
org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
at
org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at
org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
at java.lang.Thread.run(Thread.java:745)
2016-03-02 01:07:52,668 [thrift.ProcessFunction] ERROR: Internal error
processing getActiveScans
org.apache.thrift.TException: Lock not acquired
at
org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:80)
at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
at
org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
at
org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
at
org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at
org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
at java.lang.Thread.run(Thread.java:745)
2016-03-02 01:07:56,118 [tserver.TabletServer] INFO : Waiting for tablet
server lock
2016-03-02 01:07:57,706 [tserver.TabletServer] WARN : Got getScans message
from master before lock acquired, ignoring...
2016-03-02 01:07:57,707 [tserver.TabletServer$ThriftClientHandler] ERROR:
Lock not acquired
java.lang.RuntimeException: Lock not acquired
at
org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.checkPermission(TabletServer.java:1410)
at
org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.getActiveScans(TabletServer.java:1632)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
org.apache.accumulo.core.trace.wrappers.RpcServerInvocationHandler.invoke(RpcServerInvocationHandler.java:39)
at
org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:73)
at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
at
org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
at
org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
at
org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at
org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
at java.lang.Thread.run(Thread.java:745)
2016-03-02 01:07:57,710 [thrift.ProcessFunction] ERROR: Internal error
processing getActiveScans
org.apache.thrift.TException: Lock not acquired
at
org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:80)
at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
at
org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
at
org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
at
org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at
org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
at java.lang.Thread.run(Thread.java:745)
2016-03-02 01:08:01,137 [tserver.TabletServer] INFO : Waiting for tablet
server lock
2016-03-02 01:08:02,730 [tserver.TabletServer] WARN : Got getScans message
from master before lock acquired, ignoring...
2016-03-02 01:08:02,731 [tserver.TabletServer$ThriftClientHandler] ERROR:
Lock not acquired
java.lang.RuntimeException: Lock not acquired
at
org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.checkPermission(TabletServer.java:1410)
at
org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.getActiveScans(TabletServer.java:1632)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
org.apache.accumulo.core.trace.wrappers.RpcServerInvocationHandler.invoke(RpcServerInvocationHandler.java:39)
at
org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:73)
at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
at
org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
at
org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
at
org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at
org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
at java.lang.Thread.run(Thread.java:745)
2016-03-02 01:08:02,732 [thrift.ProcessFunction] ERROR: Internal error
processing getActiveScans
org.apache.thrift.TException: Lock not acquired
at
org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:80)
at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
at
org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
at
org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
at
org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at
org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
at java.lang.Thread.run(Thread.java:745)
2016-03-02 01:08:06,162 [tserver.TabletServer] INFO : Waiting for tablet
server lock
2016-03-02 01:08:07,754 [tserver.TabletServer] WARN : Got getScans message
from master before lock acquired, ignoring...
2016-03-02 01:08:07,755 [tserver.TabletServer$ThriftClientHandler] ERROR:
Lock not acquired
java.lang.RuntimeException: Lock not acquired
at
org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.checkPermission(TabletServer.java:1410)
at
org.apache.accumulo.tserver.TabletServer$ThriftClientHandler.getActiveScans(TabletServer.java:1632)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
org.apache.accumulo.core.trace.wrappers.RpcServerInvocationHandler.invoke(RpcServerInvocationHandler.java:39)
at
org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:73)
at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
at
org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
at
org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
at
org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at
org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
at java.lang.Thread.run(Thread.java:745)
2016-03-02 01:08:07,759 [thrift.ProcessFunction] ERROR: Internal error
processing getActiveScans
org.apache.thrift.TException: Lock not acquired
at
org.apache.accumulo.server.rpc.RpcWrapper$1.invoke(RpcWrapper.java:80)
at com.sun.proxy.$Proxy21.getActiveScans(Unknown Source)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2864)
at
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$getActiveScans.getResult(TabletClientService.java:2848)
at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
at
org.apache.accumulo.server.rpc.TimedProcessor.process(TimedProcessor.java:63)
at
org.apache.thrift.server.AbstractNonblockingServer$FrameBuffer.invoke(AbstractNonblockingServer.java:516)
at
org.apache.accumulo.server.rpc.CustomNonBlockingServer$1.run(CustomNonBlockingServer.java:78)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at
org.apache.accumulo.fate.util.LoggingRunnable.run(LoggingRunnable.java:35)
at java.lang.Thread.run(Thread.java:745)
2016-03-02 01:08:11,247 [tserver.TabletServer] INFO : Started replication
service on os-r6-ucmvau-ambari-us-21nf-3-5.novalocal:10002
2016-03-02 01:17:49,532 [server.Accumulo] WARN : System swappiness setting
is greater than ten (60) which can cause time-sensitive operations to be
delayed. Accumulo is time sensitive because it needs to maintain distributed
lock agreement.
Please help take a look so that we can avoid this intermittent issues as well.
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