Neal Richardson created ARROW-6957:
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Summary: [CI][Crossbow] Nightly R with sanitizers build fails
installing dependencies
Key: ARROW-6957
URL: https://issues.apache.org/jira/browse/ARROW-6957
Project: Apache Arrow
Issue Type: Bug
Components: Continuous Integration, R
Reporter: Neal Richardson
See https://circleci.com/gh/ursa-labs/crossbow/4006 for example. Failure looks
like this:
{code}
...
g++ -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer
-std=gnu++11 -I"/usr/local/RDsan/lib/R/include" -DNDEBUG
-I'/usr/local/RDsan/lib/R/site-library/Rcpp/include'
-I'/usr/local/RD/lib/R/library/BH/include' -I/usr/local/include -I. -Ircon
-fpic -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -O0 -Wall -pedantic -c TokenizerWs.cpp -o TokenizerWs.o
cc1plus: out of memory allocating 65536 bytes after a total of 31866880 bytes
cc1plus: out of memory allocating 65536 bytes after a total of 52080640 bytes
virtual memory exhausted: Cannot allocate memory
virtual memory exhausted: Cannot allocate memory
/usr/local/RDsan/lib/R/etc/Makeconf:175: recipe for target 'Collector.o' failed
make[1]: *** [Collector.o] Error 1
make[1]: *** Waiting for unfinished jobs....
/usr/local/RDsan/lib/R/etc/Makeconf:175: recipe for target 'CollectorGuess.o'
failed
make[1]: *** [CollectorGuess.o] Error 1
/usr/local/RDsan/lib/R/etc/Makeconf:175: recipe for target 'Reader.o' failed
make[1]: *** [Reader.o] Error 1
/usr/local/RDsan/lib/R/etc/Makeconf:175: recipe for target 'TokenizerWs.o'
failed
make[1]: *** [TokenizerWs.o] Error 1
make[1]: Leaving directory '/tmp/RtmpvSXO7m/R.INSTALL992bafde57/readr/src'
ERROR: compilation failed for package ‘readr’
* removing ‘/usr/local/RDsan/lib/R/site-library/readr’
Error: Failed to install 'decor' from GitHub:
(converted from warning) installation of one or more packages failed,
probably ‘readr’
Execution halted
ERROR: Service 'r-sanitizer' failed to build: The command '/bin/sh -c RDsan -e
"remotes::install_github('romainfrancois/decor')"' returned a non-zero code: 1
{code}
Some thoughts:
* This dependency is not needed to run the tests--it is a developer dependency,
only needed when you're editing the Rcpp code. So we could conditionally not
install it if we're on CI.
* The docker code around this changed in ARROW-6918 last week, around the time
this started failing. The installation of this package was moved to a different
part of the job, and it appears that {{MAKEVARS=-j8}} was added. Maybe that's
causing more memory to be used concurrently? (Also, I would be shocked if
CircleCI gave us a VM with 8 cores, so this seems wasteful and should probably
be tuned to whatever the current system has.)
cc [~apitrou][~fsaintjacques]
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