iwasakims commented on a change in pull request #697:
URL: https://github.com/apache/bigtop/pull/697#discussion_r522057535
##########
File path: bigtop_toolchain/manifests/renv.pp
##########
@@ -33,22 +33,64 @@
]
}
/(Ubuntu|Debian)/: {
- $pkgs = [
- "r-base",
- "r-base-dev",
- "pandoc"
- ]
+ if (versioncmp($operatingsystemmajrelease, '16.04') == 0) {
+ $pkgs = [
+ "r-base",
+ "r-base-dev",
+ "libcairo2-dev",
+ "pandoc",
+ "pandoc-citeproc",
+ ]
+ $rpkgs = "install_r_packages_ubt16.04"
+ } else {
+ $pkgs = [
+ "r-base",
+ "r-base-dev",
+ "pandoc",
+ ]
+ $rpkgs = "install_r_packages"
+ }
}
}
+
package { $pkgs:
ensure => installed,
- before => [Exec['install_r_packages']]
+ before => [Exec[$rpkgs]]
}
- # Install required R packages
- exec { 'install_r_packages':
- cwd => "/usr/bin",
- command => "/usr/bin/R -e \"install.packages(c('devtools', 'evaluate',
'rmarkdown', 'knitr', 'roxygen2', 'testthat', 'e1071'), repos =
'http://cran.us.r-project.org')\"",
- timeout => 6000
+ # BIGTOP-3443:
+ # Upgrade R version to 3.4.4 to fix dependency issue in R 3.2
+ #
+ # Then Install required R packages dependency
+ if ($operatingsystem == 'Ubuntu' and versioncmp($operatingsystemmajrelease,
'16.04') == 0) {
+ $url = "https://cran.rstudio.com/src/base/R-3/";
+ $rfile = "R-3.4.4.tar.gz"
+ $rdir = "R-3.4.4"
+
+ exec { "download_R":
+ cwd => "/usr/src",
+ command => "/usr/bin/wget $url/$rfile && mkdir -p $rdir && /bin/tar
-xvzf $rfile -C $rdir --strip-components=1 && cd $rdir",
+ creates => "/usr/src/$rdir",
+ }
+ exec { "install_R":
+ cwd => "/usr/src/$rdir",
+ command => "/usr/src/$rdir/configure --with-recommended-packages=yes
--without-x --with-cairo --with-libpng --with-libtiff --with-jpeglib
--with-tcltk --with-blas --with-lapack --enable-R-shlib --prefix=/usr/local &&
/usr/bin/make && /usr/bin/make install && /sbin/ldconfig",
+ creates => "/usr/local/bin/R",
+ require => [Exec["download_R"]],
+ timeout => 3000
+ }
+
+ exec { $rpkgs :
+ cwd => "/usr/local/bin",
+ command => "/usr/local/bin/R -e \"install.packages(c('devtools',
'evaluate', 'rmarkdown', 'knitr', 'roxygen2', 'testthat', 'e1071'), repos =
'http://cran.us.r-project.org')\"",
+ require => [Exec["install_R"]],
+ timeout => 6000
+ }
+ } else {
+ exec { $rpkgs :
+ cwd => "/usr/bin",
+ command => "/usr/bin/R -e \"install.packages(c('devtools', 'evaluate',
'rmarkdown', 'knitr', 'roxygen2', 'testthat', 'e1071'), repos =
'http://cran.us.r-project.org')\"",
+ timeout => 6000
+ }
Review comment:
Using the same title ("install_r_packages") for both case worked on
CentOS 8. Can we avoid using $rpgs variable?
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