[
https://issues.apache.org/jira/browse/CRUNCH-560?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=14908477#comment-14908477
]
Nithin Asokan edited comment on CRUNCH-560 at 9/25/15 7:21 PM:
---------------------------------------------------------------
I'm attaching a new patch (CRUNCH-560-002.patch) that creates a SparkContext in
constructor and copies over crunch hadoop configuration to spark hadoop
configuration.
{{yarn-cluster}} works as expected.
Edit: I have tested {{yarn-client}} and it works as expected. However,
{{yarn-client}} via Oozie Spark action does not render the Spark UI correctly,
and none of the link are clickable. I believe that would be related to
dependencies available on oozie launcher classpath, because {{spark-submit}}
cli seems to work as expected.
Ignore everything below. The failure was because I had a different version of
my Application jar on classpath. Once I fixed the classpath everything works as
expected.
--I gave it a try with {{yarn-client}} and my Spark application fails with
following error--
{code}
[2015-09-25 13:12:10,064] [WARN] [task-result-getter-0]
[org.apache.spark.scheduler.TaskSetManager] - Lost task 0.0 in stage 0.0 (TID
0, masked.host.domain.net): java.io.InvalidClassException:
org.apache.crunch.impl.spark.CounterAccumulatorParam; local class incompatible:
stream classdesc serialVersionUID = 6448445829484387611, local class
serialVersionUID = 6428381465187525958
at java.io.ObjectStreamClass.initNonProxy(ObjectStreamClass.java:621)
at
java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1623)
at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1518)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1774)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at
java.io.ObjectInputStream.defaultReadObject(ObjectInputStream.java:501)
at
org.apache.spark.Accumulable$$anonfun$readObject$1.apply$mcV$sp(Accumulators.scala:133)
at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1137)
at org.apache.spark.Accumulable.readObject(Accumulators.scala:132)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readArray(ObjectInputStream.java:1707)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1345)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at
org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSerializer.scala:68)
at
org.apache.spark.serializer.JavaSerializerInstance.deserialize(JavaSerializer.scala:94)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:60)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:64)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:203)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
{code}
--I haven't investigated in detail on what could cause this failure, but I
suspect somewhere configurations are getting updated and it fails to
deserialize. I tested my older patch and it appears to produce the same error
in {{yarn-client}} mode.--
was (Author: nithinasokan):
I'm attaching a new patch (CRUNCH-560-002.patch) that creates a SparkContext in
constructor and copies over crunch hadoop configuration to spark hadoop
configuration.
{{yarn-cluster}} works as expected. I gave it a try with {{yarn-client}} and my
Spark application fails with following error
{code}
[2015-09-25 13:12:10,064] [WARN] [task-result-getter-0]
[org.apache.spark.scheduler.TaskSetManager] - Lost task 0.0 in stage 0.0 (TID
0, masked.host.domain.net): java.io.InvalidClassException:
org.apache.crunch.impl.spark.CounterAccumulatorParam; local class incompatible:
stream classdesc serialVersionUID = 6448445829484387611, local class
serialVersionUID = 6428381465187525958
at java.io.ObjectStreamClass.initNonProxy(ObjectStreamClass.java:621)
at
java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1623)
at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1518)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1774)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at
java.io.ObjectInputStream.defaultReadObject(ObjectInputStream.java:501)
at
org.apache.spark.Accumulable$$anonfun$readObject$1.apply$mcV$sp(Accumulators.scala:133)
at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1137)
at org.apache.spark.Accumulable.readObject(Accumulators.scala:132)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readArray(ObjectInputStream.java:1707)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1345)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at scala.collection.immutable.$colon$colon.readObject(List.scala:362)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1896)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at
java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:1993)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1918)
at
java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1801)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1351)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:371)
at
org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSerializer.scala:68)
at
org.apache.spark.serializer.JavaSerializerInstance.deserialize(JavaSerializer.scala:94)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:60)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:64)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:203)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
{code}
I haven't investigated in detail on what could cause this failure, but I
suspect somewhere configurations are getting updated and it fails to
deserialize. I tested my older patch and it appears to produce the same error
in {{yarn-client}} mode.
> SparkPipeline should honor Spark Hadoop configuration
> -----------------------------------------------------
>
> Key: CRUNCH-560
> URL: https://issues.apache.org/jira/browse/CRUNCH-560
> Project: Crunch
> Issue Type: Bug
> Components: Spark
> Reporter: Nithin Asokan
> Attachments: CRUNCH-560-001.patch, CRUNCH-560-002.patch
>
>
> Executing a SparkPipeline using {{SparkPipeline(String sparkConnect, String
> appName, Class<?> jarClass, Configuration conf)}} constructor and
> {{yarn-cluster}} mode via Oozie Spark action causes a ClassNotFoundException
> during job creation. The problem appears to be Spark not being able to read
> Crunch InputFormats from Hadoop configuration.
> {code}
> 15/09/18 00:06:39 WARN scheduler.DAGScheduler: Creating new stage failed due
> to exception - job: 0
> java.lang.RuntimeException: readObject can't find class
> at org.apache.crunch.io.FormatBundle.readClass(FormatBundle.java:158)
> at org.apache.crunch.io.FormatBundle.readFields(FormatBundle.java:133)
> at
> org.apache.crunch.io.FormatBundle.fromSerialized(FormatBundle.java:62)
> at
> org.apache.crunch.io.CrunchInputs.getFormatNodeMap(CrunchInputs.java:79)
> at
> org.apache.crunch.impl.mr.run.CrunchInputFormat.getSplits(CrunchInputFormat.java:45)
> at
> org.apache.spark.rdd.NewHadoopRDD.getPartitions(NewHadoopRDD.scala:95)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:219)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:217)
> at scala.Option.getOrElse(Option.scala:120)
> at org.apache.spark.rdd.RDD.partitions(RDD.scala:217)
> at
> org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:32)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:219)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:217)
> at scala.Option.getOrElse(Option.scala:120)
> at org.apache.spark.rdd.RDD.partitions(RDD.scala:217)
> at
> org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:32)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:219)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:217)
> at scala.Option.getOrElse(Option.scala:120)
> at org.apache.spark.rdd.RDD.partitions(RDD.scala:217)
> at
> org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:32)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:219)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:217)
> at scala.Option.getOrElse(Option.scala:120)
> at org.apache.spark.rdd.RDD.partitions(RDD.scala:217)
> at
> org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:32)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:219)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:217)
> at scala.Option.getOrElse(Option.scala:120)
> at org.apache.spark.rdd.RDD.partitions(RDD.scala:217)
> at
> org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:32)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:219)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:217)
> at scala.Option.getOrElse(Option.scala:120)
> at org.apache.spark.rdd.RDD.partitions(RDD.scala:217)
> at
> org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:32)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:219)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:217)
> at scala.Option.getOrElse(Option.scala:120)
> at org.apache.spark.rdd.RDD.partitions(RDD.scala:217)
> at
> org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:32)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:219)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:217)
> at scala.Option.getOrElse(Option.scala:120)
> at org.apache.spark.rdd.RDD.partitions(RDD.scala:217)
> at
> org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:32)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:219)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:217)
> at scala.Option.getOrElse(Option.scala:120)
> at org.apache.spark.rdd.RDD.partitions(RDD.scala:217)
> at org.apache.spark.rdd.UnionRDD$$anonfun$1.apply(UnionRDD.scala:66)
> at org.apache.spark.rdd.UnionRDD$$anonfun$1.apply(UnionRDD.scala:66)
> at
> scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244)
> at
> scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244)
> at scala.collection.immutable.List.foreach(List.scala:318)
> at scala.collection.TraversableLike$class.map(TraversableLike.scala:244)
> at scala.collection.AbstractTraversable.map(Traversable.scala:105)
> at org.apache.spark.rdd.UnionRDD.getPartitions(UnionRDD.scala:66)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:219)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:217)
> at scala.Option.getOrElse(Option.scala:120)
> at org.apache.spark.rdd.RDD.partitions(RDD.scala:217)
> at
> org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:32)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:219)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:217)
> at scala.Option.getOrElse(Option.scala:120)
> at org.apache.spark.rdd.RDD.partitions(RDD.scala:217)
> at
> org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:32)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:219)
> at org.apache.spark.rdd.RDD$$anonfun$partitions$2.apply(RDD.scala:217)
> at scala.Option.getOrElse(Option.scala:120)
> at org.apache.spark.rdd.RDD.partitions(RDD.scala:217)
> at org.apache.spark.ShuffleDependency.<init>(Dependency.scala:82)
> at
> org.apache.spark.rdd.ShuffledRDD.getDependencies(ShuffledRDD.scala:80)
> at org.apache.spark.rdd.RDD$$anonfun$dependencies$2.apply(RDD.scala:206)
> at org.apache.spark.rdd.RDD$$anonfun$dependencies$2.apply(RDD.scala:204)
> at scala.Option.getOrElse(Option.scala:120)
> at org.apache.spark.rdd.RDD.dependencies(RDD.scala:204)
> at
> org.apache.spark.scheduler.DAGScheduler.visit$1(DAGScheduler.scala:298)
> at
> org.apache.spark.scheduler.DAGScheduler.getParentStages(DAGScheduler.scala:310)
> at
> org.apache.spark.scheduler.DAGScheduler.newStage(DAGScheduler.scala:244)
> at
> org.apache.spark.scheduler.DAGScheduler.handleJobSubmitted(DAGScheduler.scala:731)
> at
> org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1362)
> at
> org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1354)
> at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
> Caused by: java.lang.ClassNotFoundException: Class
> org.apache.crunch.types.avro.AvroInputFormat not found
> at
> org.apache.hadoop.conf.Configuration.getClassByName(Configuration.java:2018)
> at org.apache.crunch.io.FormatBundle.readClass(FormatBundle.java:156)
> ... 84 more
> {code}
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