Moving the Drug signature FSM terms to an external file would be a great idea. It depends on when MedER (https://issues.apache.org/jira/browse/CTAKES-95) will ready as I think that should replace the current DrugNER- any ideas when that will be ready?
--Pei > -----Original Message----- > From: Kannan Thiagarajan [mailto:[email protected]] > Sent: Wednesday, July 17, 2013 3:31 PM > To: [email protected] > Subject: Re: Medication Route in DrugNER > > Hello, > > On a related topic, is there a way to feed additional words to the FSMs via an > external interface such as a file? If not, is this something that can be > considered for future? > > Thanks > > > > > > On Wed, Jul 17, 2013 at 2:15 PM, Masanz, James J. > <[email protected]>wrote: > > > > > I checked with Sean and he doesn't remember if it was intentional that > > "iv" was not listed. > > > > I have no objection to adding "iv" to the iv_singleInjectWordSet. > > > > -- James > > > > -----Original Message----- > > From: [email protected] > [mailto: > > [email protected]] On Behalf > Of > > Masanz, James J. > > Sent: Wednesday, July 17, 2013 2:04 PM > > To: '[email protected]' > > Subject: RE: Medication Route in DrugNER > > > > Sean, > > > > Do you recall if there was a reason "iv" was not included in the list > > originally? > > > > To clarify, the snippet Pei shows below is what it would look like if > > he added it; the snippet is not showing what the code already looks like. > > So technically "IV" would not be added, "iv" would be. > > > > Also, fyi, iv_singleInjectWordSet already includes " subcutaneously" too. > > > > Pei, looks like there is a copy/paste error, that subcutaneously is > > already listed twice for iv_singleInjectWordSet . > > Could you remove the extra one as long as you are in that file? > > > > -- James > > > > -----Original Message----- > > From: [email protected] > [mailto: > > [email protected]] On Behalf > Of > > Chen, Pei > > Sent: Wednesday, July 17, 2013 1:53 PM > > To: [email protected] > > Subject: RE: Medication Route in DrugNER > > > > Any objections to adding 'IV' to the Inject/Intervenious machines- > > RouteFSM.java? > > iv_singleInjectWordSet.add("intervenously"); > > iv_singleInjectWordSet.add("injection"); > > iv_singleInjectWordSet.add("injections"); > > iv_singleInjectWordSet.add("injected"); > > iv_singleInjectWordSet.add("iv"); I just tested it out > > that it worked fine after we added iv to the FSM. > > I'll create a Jira in the meantime. > > > > --Pei > > > > > -----Original Message----- > > > From: Masanz, James J. [mailto:[email protected]] > > > Sent: Wednesday, July 17, 2013 1:59 PM > > > To: [email protected] > > > Subject: RE: Medication Route in DrugNER > > > > > > info from Sean: > > > > > > I would expect 'intravenous' to be found, but 'IV' isn't included in > > > the > > list of > > > route FSM > > > > > > IV might be being found as a roman numeral > > > > > > ________________________________________ > > > From: [email protected] > [dev- > > > [email protected]] on behalf of > > > Chen, Pei [[email protected]] > > > Sent: Wednesday, July 17, 2013 11:08 AM > > > To: [email protected] > > > Subject: Medication Route in DrugNER > > > > > > Does anyone recall if the intravenous or IV could be picked up as a > > route by > > > the DrugNER module? > > > For example: "cisplatin 2.5 mg IV every 24 hours." IV gets picked up > > > as a Medication Frequency (4) instead of Route. > > > > > > --Pei > > > > > > > > > > -- > Best Regards > Kannan Thiagarajan
