Hi Ted,
Detecting the stage/grade and other attributes and asserting those
relationships to the cancer aside (That's probably a separate
discussion)- But in your example, since there are distinct SNOMEDCT
concepts and direct matches, it was able to identify "Cervical
intraepithelial neoplasia grade 1"
cui = "C0349458"
code = "285836003"
as well as "Cervical intraepithelial neoplasia"
cui = "C0206708"
code = "285636001"
,etc.
It should also be able to identify "CIN 2" as there should be an exact
match in SNOMEDCT: (CIN 2 - Cervical intraepithelial neoplasia 2
[A3002688/SNOMEDCT/SY/285838002]
Please see attached xml output.
I am using out of the box AggregatePlaintextUMLSProcessor from the 3.1RC3
--Pei
On Tue, Sep 3, 2013 at 8:24 PM, Assur, Ted
<theodore.as...@providence.org> wrote:
> I'm trying to understand what would prevent the
> AggregatePlaintextUMLSProcessor AE from correctly parsing specific problems
> that are defined in the UMLS version used by cTAKES.
>
> For example,
> CIN (Cervical Intraepithelial Neoplasia) in its general usage is parsed out
> as UMLS CUI C0206708.
>
> CIN comes in 3 grades, 1, 2 and 3. Sometimes this is reported with Roman
> Numerals, I,II, and III.
>
> cTAKES correctly identifies "CIN 3" and "CIN III" with UMLS CUI C0851140:
> "Carcinoma in situ of uterine cervix."
>
> However, I cannot get it to recognize CIN 1, CIN I, CIN 2, or CIN II as their
> correct concepts, "Cervical intraepithelial neoplasia grade 1" and "Cervical
> intraepithelial neoplasia grade 2" respectively.
>
> Is there a way to tune the detection of UMLS concepts?
>
>
>
>
> --------------------------------------------
> Ted Assur
> IT Solutions Architect for Cancer Research
> Providence Health & Services
> ted.as...@providence.org
> 503-215-6476
>
> Crede, ut intelligas.
> Intellego, ut credam.
>
>
>
>
> ________________________________
>
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> error, please immediately advise the sender by reply email and delete this
> message.
<?xml version="1.0" encoding="UTF-8"?><CAS version="2">
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